Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00494 ATGGCGACCTCAAAACCTCAAAGGTCACCGGAGGAGGTTGAAGACATTATTCTTCGTAAGGTCTTCCTTGTCTCTCTCACCGGTTCTTCCGATTCCGATTCTCGGATCGTTTATCTCGAGCAAACCGCCGCCGAACTCCTTAGCGAGAGCAAGCAATTGAGGATTTCAAGAGATGTGATGGAGCGCCTCATAATCGATCGCCTTTCCGGAAATTTCCCATCCGCGGAGCCCCCTTTTCAGTACCTAATCGGTTGCTACCGTCGAGCTCACGACGAGAGTAAGAAAATTGCTTCTATGAAGGATAAGAATTTGCGGTCTGATATTGAAATTGCGCTCAAGCAAGCCAAGAAGTTGGCGATTTCGTATTGTAGGATTCATTTGGGGAATCCTGAATTGTTTTCGGGTGGGGATTTGGGTGCTGAGTCCAACACTTCGCCTTTGCTTCCGTTGGTTTTCTCTGAGATTGGGAGCTCCGTGGATGGATTTGGGTCTACTAGCAGTGTTGGTGGTCTTCAGTGCCCTCCTGGTTTCTTGGAGGAGTTTCTACGTGACTCGGATTTTGATACATTAGACCCTATCCTGAAGGGGTTGTATGAGGATTTAAGGGGTAGTGTCCTTAAAGTTTCGGCTCTTGGGAACTTCCAGCAGCCTTTAAGGGCACTTAGGTTTCTGGTCAGTTTTCCTGTTGGTGCTAAATCTCTTGTAAATCACCCTTGGTGGATTCCCACCGGAAAATATTCCAATGGGCGTGTCATTGAGATGACAAGCATTTTGGGGCATTTCTTCCATGTCAGTGCTCTGCCTGACCATGCCATTTTTAAGAGCCAACCTGATGTTGGGCAACAGTGCTTTTCAGAAGCATCCACTCGTAGACCAACTGATTTACTTTCTTCATTCACTACAATTAAAACTGTCATGAATAGCTTATATGATGGCCTCGCGGAAGTTCTTCTCTCCCTTCTTAAGAACACAGAGACCCGTGAAAATGTTCTCGAGTATCTTGCAGAGGTGATAAATAGAAACTCATCAAGGGCTCATATACAGGTTGATCCTCTCTCCTGTGCAAGTTCGGGGATGTTTGTTAATCTCAGTGCCATCATGCTACGTCTCTGTGAGCCATTTCTAGATGCAAACTTGACTAAAAGGGATAAAATTGATCCAAAATATGTATGTTATGGTAACCGCTTGGAGCTAAGAGGATTAACTGCTCTACATGCTTCGTCGGAAGAAGTTACTGAGTGGATTAATAATGGTACTCAGTTGAATACTGATAACTCCGGGCAGTTCAGCGACAGTGAAAGTCGCTTGCTGCAATCCCAAGAAGCTTCCAGTTCTGGCAGTAATGCTACTACTGGATCTTCTACTGCAAAGGCAAGATCGAGTAGTGATAAAACTAGGTACCCTTTCATATGTGAGTGCTTCTTTATGACTGCAAGGGTGCTGAATTTGGGCTTGTTAAAAGCATTTTCAGACTTCAAACATTTAGTACAGGATATATCTAGGTGTGAAGATACATTGTCCACACTCAAAGCCATGCAAGGACAAGGGCCCGCCCCACAACTTGAAATTGATATAGCTCGCCTTGAGAAGGAAATAGAGTTGTACTCACAGGAAAAGCTTTGTTATGAAGCTCAAATACTGAGGGATGGGACACTAATCCAACAAGCTCTTACTTTCTATCGATTGATGGTTGTCTGGTTAGTTGGTTTGGTTGGTGGATTTAAAATGCCTCTTCCATCAACTTGCCCAATGGAATTTGCATCCATGCCAGAGCATTTTGTGGAAGATGCAATGGAATTGCTTATATTTGCTTCTCGGATTCCAAAAGCTTTGGATGGAATCAATTTGGATGATTTTATGAACTTCATTATTATGTTTATGGCAAGCCCAGAGTATATAAGAAATCCTTACTTAAGAGCAAAGATGGTCGAAGTTCTGAACTGCTGGATTCCTCGTAGAAGTGGTGCATCTGTAACAGCAACATTATTTGAAGGGCACCAACTATCGCTTGAATATCTTGTTAGGAATCTTTTAAAGCTTTACGTGGACATTGAGTTCACTGGTTCACATACACAGTTTTATGACAAGTTCAACATCCGTCATAATATTGCAGAACTTCTCGAATATCTTTGGCAGGTTCCAAGTCATCGCAGTGCTTGGAGAATGATTGCCAAGGAAGAGGAGAAGGGTGTTTACTTGAATTTCTTGAACTTCCTAATCAATGATAGCATATATCTTCTTGATGAAAGCCTTAATAAGATTCTCGAACTTAAAGAGCTTGAAGCTGAAATGTCAAATACCGCAGAATGGGAACAGCGACCTGCTCAAGAGAGGCAGGAGAGAACTCGGCTGTTTCACTCCCAAGAAAATATCATCCGAATTGATATGAAATTAGCAAATGAGGATGTGAGTATGCTGGCATTTACGTCAGAGCAAATCACAGCTCCTTTCCTACTTCCAGAGATGGTCGAAAGGGTGGCCAGCATGCTTAATTATTTTCTCCTGCAACTTGTTGGTCCTCAACGAAGATCTCTTAGTCTGAAAGACCCCGAAAAGTACGAATTCCGTCCTAAGGAGTTGCTCAAGCAGATTGTTCACATGTATGTTCATCTGGCAAGAGGCGATACAGATAATATTTTCCCAGCTGCCATTTCGAAGGACGGGCGATCATACAATGAGCAGTTGTTCAATGCTGCAGCAGTTGTACTTAGGCGAATTGGAGAGGATGGTAGGATCATACAGGAGTTTGTTGCTCTTGGTAACAAAGCCAAGGATGCAGCTTCTGAGGCAATGGATGCTGAAGCTACTCTAGGAGATATACCGGACGAGTTCCTCGACCCAATCCAATACACTTTAATGAAGGACCCTGTGATCTTACCTTCTTCAAGGATCACGGTCGACAGACCCGTCATTCAAAGACATCTCCTCAGCGACAGCACCGATCCGTTCAACCGGTCTCATCTGACAGCAGACATGCTAATACCGAACGAAGAACTGAAAGCAAGAATCAAAGGATTTATCAGGTCACAAGAACTGAAGAAGCAACTGGAAGGAGGAGGGGTTGCTATGCAGAGCAGCAAGACAACCATCCAACCCACAAACGGAGAGATGTTGATTGATTAA 3123 43.71 MATSKPQRSPEEVEDIILRKVFLVSLTGSSDSDSRIVYLEQTAAELLSESKQLRISRDVMERLIIDRLSGNFPSAEPPFQYLIGCYRRAHDESKKIASMKDKNLRSDIEIALKQAKKLAISYCRIHLGNPELFSGGDLGAESNTSPLLPLVFSEIGSSVDGFGSTSSVGGLQCPPGFLEEFLRDSDFDTLDPILKGLYEDLRGSVLKVSALGNFQQPLRALRFLVSFPVGAKSLVNHPWWIPTGKYSNGRVIEMTSILGHFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPTDLLSSFTTIKTVMNSLYDGLAEVLLSLLKNTETRENVLEYLAEVINRNSSRAHIQVDPLSCASSGMFVNLSAIMLRLCEPFLDANLTKRDKIDPKYVCYGNRLELRGLTALHASSEEVTEWINNGTQLNTDNSGQFSDSESRLLQSQEASSSGSNATTGSSTAKARSSSDKTRYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDTLSTLKAMQGQGPAPQLEIDIARLEKEIELYSQEKLCYEAQILRDGTLIQQALTFYRLMVVWLVGLVGGFKMPLPSTCPMEFASMPEHFVEDAMELLIFASRIPKALDGINLDDFMNFIIMFMASPEYIRNPYLRAKMVEVLNCWIPRRSGASVTATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRSAWRMIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWEQRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRRSLSLKDPEKYEFRPKELLKQIVHMYVHLARGDTDNIFPAAISKDGRSYNEQLFNAAAVVLRRIGEDGRIIQEFVALGNKAKDAASEAMDAEATLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTADMLIPNEELKARIKGFIRSQELKKQLEGGGVAMQSSKTTIQPTNGEMLID 1040
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2902783 2910396 + Cp4.1LG03g08230.1 Cpe03g00494 466211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00494 1040 SMART Ubox_2 943 1006 IPR003613 GO:0004842|GO:0016567
Cpe03g00494 1040 MobiDBLite consensus disorder prediction 422 460 - -
Cpe03g00494 1040 PANTHER - 1 1017 - -
Cpe03g00494 1040 Coils Coil 518 545 - -
Cpe03g00494 1040 Pfam U-box domain 940 1010 IPR003613 GO:0004842|GO:0016567
Cpe03g00494 1040 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 939 1017 IPR013083 -
Cpe03g00494 1040 SUPERFAMILY RING/U-box 932 1010 - -
Cpe03g00494 1040 ProSiteProfiles U-box domain profile. 939 1013 IPR003613 GO:0004842|GO:0016567
Cpe03g00494 1040 CDD RING-Ubox_UBE4A 942 1010 - -
Cpe03g00494 1040 Pfam Ubiquitin elongating factor core 258 923 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Cpe03g00494 1040 PANTHER UBIQUITINATION FACTOR E4 1 1017 IPR045132 GO:0000151|GO:0030433|GO:0034450
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00494 Cpe04g00173 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00494 Cpe-Chr3:2902783 Cpe04g00173 Cpe-Chr4:1699664 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00494 K10597 - csv:101211398 1909.03