Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe03g00496 | ATGGGGATTAAATTTTCGAAGCAAGGTCAGGGGAAGGTTGAAAACCTTAGTTTGCAACACCACCTGATGAATTATCTATCCAAAAAATTTTACATCCGTAACTTGGTATCCAAGCAAAGGAGGCGCATGCTTGTTGCTGGCTATGATCTTGACATGTCATACATTACGGATCATATTCTGGCAATGTCATTCCCTGCGGAACGGATGCGTGCTATGTATCGTAATCCCCTATGGCAGGTTAAGTCCGTATTGGACATGAGGCATCAAGGACATTACAAGATCTATAATCTCTGTATTGAAGAATCATATGATCCATCACATTTTCATGGGCGCGTGGAGTCATTTCCTTTTGATGATAATCATGTTCCACCGCTACATATGATCAAACTCTTCTGTGAAAATGTCTCTTCATGGATATCATCCCACCCAAAGAATATTGCGGTTATACACTGCATGGCTGGGAAAGGTCGAACCGGATTAATGGTATGTGCCTACTTGGTTTACTGTGGCATGTCAGTGGAGGATGCACTTCACCTGTATGCTCAGAGGCGGACGACCAATAATGAAGGAGTATCAATTCCAAGCCAACGGCGGTATGTTGGCTACTGGGCAAAGTGCCTTTCCTTTCCCAAGGGGGTTTATAATGGATCTCCTGAGGTGAAGTTGCCCATACCCTGTAGGAGAGAGTTGCAGAGAATTCGTCTTTATGACACAGTTAACACTGAATCAATTTTCTTTGTGGTCTCAGAATTGCAGGAGGTTCCTTCTCAGCTATACCGTCCATCTATGGAACGTACCCGGAGTTGTTGCAGACAATTTAAGAGTGGTTATGAGAGCAGTAACAGTCCACGTTATTTTTTATCTTTTGTTGAAGGCGAAAATGAAGAGAACAAGTCAGAAGTAGAGCCCCGTTTTATTGTTCAAATGGATACAGAGTGTTCAGCACTATACCACAAAACCTGCCTTGACTACAATTTTGAGAAGCCTTTACCTCTAACTGGAGATGTGCGCATCATATTCTACGCAAAGATGTTTGGAGGGCGTCTGTTCTATGCTTGCTTCAACTCAGCTTTCATTAAAAACAGCTTGATACAGCTAAGGTTGCAGGATTTGGACAAAGTTGGGAAAAAGGGAAGGTCGATTTGTGGTCCATCCTTCTGCTTGGAGTTGGTATTTGGTCCTGCCAATGCAAAACACTCATTTTCGACTTCGTCCGAAGACGAATGCCCTAGATATGATTCGTCTTAA | 1248 | 42.95 | MGIKFSKQGQGKVENLSLQHHLMNYLSKKFYIRNLVSKQRRRMLVAGYDLDMSYITDHILAMSFPAERMRAMYRNPLWQVKSVLDMRHQGHYKIYNLCIEESYDPSHFHGRVESFPFDDNHVPPLHMIKLFCENVSSWISSHPKNIAVIHCMAGKGRTGLMVCAYLVYCGMSVEDALHLYAQRRTTNNEGVSIPSQRRYVGYWAKCLSFPKGVYNGSPEVKLPIPCRRELQRIRLYDTVNTESIFFVVSELQEVPSQLYRPSMERTRSCCRQFKSGYESSNSPRYFLSFVEGENEENKSEVEPRFIVQMDTECSALYHKTCLDYNFEKPLPLTGDVRIIFYAKMFGGRLFYACFNSAFIKNSLIQLRLQDLDKVGKKGRSICGPSFCLELVFGPANAKHSFSTSSEDECPRYDSS | 415 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 2914342 | 2919236 | - | Cp4.1LG03g08170.1 | Cpe03g00496 | 466213 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe03g00496 | 415 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 129 | 184 | IPR000387 | GO:0016311|GO:0016791 | |
| Cpe03g00496 | 415 | Pfam | C2 domain of PTEN tumour-suppressor protein | 318 | 392 | IPR014020 | - | |
| Cpe03g00496 | 415 | Gene3D | - | 275 | 397 | - | - | |
| Cpe03g00496 | 415 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 41 | 210 | IPR029023 | - | |
| Cpe03g00496 | 415 | PANTHER | BNAC03G16750D PROTEIN | 1 | 409 | - | - | |
| Cpe03g00496 | 415 | Pfam | Tyrosine phosphatase family | 146 | 186 | IPR026893 | GO:0004721 | |
| Cpe03g00496 | 415 | ProSiteProfiles | C2 tensin-type domain profile. | 241 | 395 | IPR014020 | - | |
| Cpe03g00496 | 415 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 149 | 159 | IPR016130 | GO:0016311|GO:0016791 | |
| Cpe03g00496 | 415 | Gene3D | Protein tyrosine phosphatase superfamily | 28 | 209 | IPR029021 | - | |
| Cpe03g00496 | 415 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 1 | 409 | - | - | |
| Cpe03g00496 | 415 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 49 | 205 | IPR029021 | - | |
| Cpe03g00496 | 415 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 293 | 394 | IPR035892 | - | |
| Cpe03g00496 | 415 | CDD | PTP_PTEN | 51 | 205 | IPR045101 | GO:0016791 | |
| Cpe03g00496 | 415 | SMART | PTEN_C2_2 | 223 | 394 | IPR014020 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe03g00496 | Cpe04g00171 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe03g00496 | Cpe-Chr3:2914342 | Cpe04g00171 | Cpe-Chr4:1679284 | 0 | dispersed | |
| Cpe03g00496 | Cpe-Chr3:2914342 | Cpe04g00296 | Cpe-Chr4:3737062 | 1.27E-45 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe03g00496 | K01110 | - | csv:101212127 | 773.852 |