Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00513 ATGGACTTGACTCCTGCGATTTCCACCGCCGTCGCCGCCATTACCACCGGCGGAGGACCTGTCAAATCCCCTGAATTAGACACCGACACACCCATCAAAATCCAACCCACCACCAAATCTCACCCTTTCACCAACGGTGTCCTCAAGCGCCACCATAACACCCCACCGCCTGTCGTCTACAAAGAATGCCTCAAGAATCACGCCGCCAGTTTAGGTGCCCATGCTTTGGACGGCTGTGGCGAGTTCATGCCTTCCTCTACCGCCACCGCCTCCGATCCCACTTCCCTTAAATGCGCTGCTTGCGGCTGCCACCGGAATTTCCACCGCCGTGAGCCGGAGGACTCAATCGCCACCCCGACGACAACCCATATCATTGAGTACCAACCTCACCATCGTCACCACCCACCGCCACCTGCAGCAAATCGAAGCCCAAGCTCTGCCTCTCCTCCACCGATCTCTTCCTCCTACTACCCTTCAGCTCCCCACATGCTTCTTGCCCTTTCCGGCGGACTGCCGGAAAACGCCAGCGGTGGATTCCACCACTCGATTCTGACTCCAAGCCCCAATTCGAGAAAGCGATTCAGAACAAAATTCACTCAAAATCAAAAGGAAAAAATGTATGAATTTGCAGAAAAAGTGGGTTGGAAGATTCAAAAACGAGACGAAGATATGATCCAAGAATTCTGCAACAACGTCGGAGTAGACAGAGGCGTTCTCAAAGTTTGGATGCACAACAACAAGAACACTTTGGGGAAAAAAGACGGCACCCAGAACACCAACGGCAGCGGTGGCGACGGCGACGACGACGGCGATGACAAAATGAACGGCGGCAACGAGCCACACGCCGCCGCAAATGGGTCGTCTTCTTCATCTTGA 876 54.11 MDLTPAISTAVAAITTGGGPVKSPELDTDTPIKIQPTTKSHPFTNGVLKRHHNTPPPVVYKECLKNHAASLGAHALDGCGEFMPSSTATASDPTSLKCAACGCHRNFHRREPEDSIATPTTTHIIEYQPHHRHHPPPPAANRSPSSASPPPISSSYYPSAPHMLLALSGGLPENASGGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKRDEDMIQEFCNNVGVDRGVLKVWMHNNKNTLGKKDGTQNTNGSGGDGDDDGDDKMNGGNEPHAAANGSSSSS 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3026427 3027302 + Cp4.1LG03g08020.1 Cpe03g00513 466230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00513 291 MobiDBLite consensus disorder prediction 128 154 - -
Cpe03g00513 291 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 191 248 IPR006455 -
Cpe03g00513 291 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 60 111 IPR006456 -
Cpe03g00513 291 Pfam ZF-HD protein dimerisation region 58 112 IPR006456 -
Cpe03g00513 291 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 1 261 - -
Cpe03g00513 291 SUPERFAMILY Homeodomain-like 184 252 IPR009057 -
Cpe03g00513 291 MobiDBLite consensus disorder prediction 249 264 - -
Cpe03g00513 291 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 60 111 IPR006456 -
Cpe03g00513 291 MobiDBLite consensus disorder prediction 30 44 - -
Cpe03g00513 291 MobiDBLite consensus disorder prediction 16 51 - -
Cpe03g00513 291 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 261 - -
Cpe03g00513 291 MobiDBLite consensus disorder prediction 248 291 - -
Cpe03g00513 291 Gene3D - 183 252 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00513 Cpe-Chr3:3026427 Cpe09g00178 Cpe-Chr9:1036932 5.11E-65 dispersed
Cpe01g02394 Cpe-Chr1:19993956 Cpe03g00513 Cpe-Chr3:3026427 1.49E-95 wgd
Cpe13g00949 Cpe-Chr13:7977814 Cpe03g00513 Cpe-Chr3:3026427 2.28E-92 wgd
Cpe03g00513 Cpe-Chr3:3026427 Cpe04g00062 Cpe-Chr4:611328 7.46E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49181 PF04770 ZF-HD_dimer 6.20E-29 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00513 - - csv:101204974 445.662