Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe03g00513 | ATGGACTTGACTCCTGCGATTTCCACCGCCGTCGCCGCCATTACCACCGGCGGAGGACCTGTCAAATCCCCTGAATTAGACACCGACACACCCATCAAAATCCAACCCACCACCAAATCTCACCCTTTCACCAACGGTGTCCTCAAGCGCCACCATAACACCCCACCGCCTGTCGTCTACAAAGAATGCCTCAAGAATCACGCCGCCAGTTTAGGTGCCCATGCTTTGGACGGCTGTGGCGAGTTCATGCCTTCCTCTACCGCCACCGCCTCCGATCCCACTTCCCTTAAATGCGCTGCTTGCGGCTGCCACCGGAATTTCCACCGCCGTGAGCCGGAGGACTCAATCGCCACCCCGACGACAACCCATATCATTGAGTACCAACCTCACCATCGTCACCACCCACCGCCACCTGCAGCAAATCGAAGCCCAAGCTCTGCCTCTCCTCCACCGATCTCTTCCTCCTACTACCCTTCAGCTCCCCACATGCTTCTTGCCCTTTCCGGCGGACTGCCGGAAAACGCCAGCGGTGGATTCCACCACTCGATTCTGACTCCAAGCCCCAATTCGAGAAAGCGATTCAGAACAAAATTCACTCAAAATCAAAAGGAAAAAATGTATGAATTTGCAGAAAAAGTGGGTTGGAAGATTCAAAAACGAGACGAAGATATGATCCAAGAATTCTGCAACAACGTCGGAGTAGACAGAGGCGTTCTCAAAGTTTGGATGCACAACAACAAGAACACTTTGGGGAAAAAAGACGGCACCCAGAACACCAACGGCAGCGGTGGCGACGGCGACGACGACGGCGATGACAAAATGAACGGCGGCAACGAGCCACACGCCGCCGCAAATGGGTCGTCTTCTTCATCTTGA | 876 | 54.11 | MDLTPAISTAVAAITTGGGPVKSPELDTDTPIKIQPTTKSHPFTNGVLKRHHNTPPPVVYKECLKNHAASLGAHALDGCGEFMPSSTATASDPTSLKCAACGCHRNFHRREPEDSIATPTTTHIIEYQPHHRHHPPPPAANRSPSSASPPPISSSYYPSAPHMLLALSGGLPENASGGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKRDEDMIQEFCNNVGVDRGVLKVWMHNNKNTLGKKDGTQNTNGSGGDGDDDGDDKMNGGNEPHAAANGSSSSS | 291 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 3026427 | 3027302 | + | Cp4.1LG03g08020.1 | Cpe03g00513 | 466230 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe03g00513 | 291 | MobiDBLite | consensus disorder prediction | 128 | 154 | - | - | |
Cpe03g00513 | 291 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 191 | 248 | IPR006455 | - | |
Cpe03g00513 | 291 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 60 | 111 | IPR006456 | - | |
Cpe03g00513 | 291 | Pfam | ZF-HD protein dimerisation region | 58 | 112 | IPR006456 | - | |
Cpe03g00513 | 291 | PANTHER | HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN | 1 | 261 | - | - | |
Cpe03g00513 | 291 | SUPERFAMILY | Homeodomain-like | 184 | 252 | IPR009057 | - | |
Cpe03g00513 | 291 | MobiDBLite | consensus disorder prediction | 249 | 264 | - | - | |
Cpe03g00513 | 291 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 60 | 111 | IPR006456 | - | |
Cpe03g00513 | 291 | MobiDBLite | consensus disorder prediction | 30 | 44 | - | - | |
Cpe03g00513 | 291 | MobiDBLite | consensus disorder prediction | 16 | 51 | - | - | |
Cpe03g00513 | 291 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 1 | 261 | - | - | |
Cpe03g00513 | 291 | MobiDBLite | consensus disorder prediction | 248 | 291 | - | - | |
Cpe03g00513 | 291 | Gene3D | - | 183 | 252 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g00513 | Cpe-Chr3:3026427 | Cpe09g00178 | Cpe-Chr9:1036932 | 5.11E-65 | dispersed | |
Cpe01g02394 | Cpe-Chr1:19993956 | Cpe03g00513 | Cpe-Chr3:3026427 | 1.49E-95 | wgd | |
Cpe13g00949 | Cpe-Chr13:7977814 | Cpe03g00513 | Cpe-Chr3:3026427 | 2.28E-92 | wgd | |
Cpe03g00513 | Cpe-Chr3:3026427 | Cpe04g00062 | Cpe-Chr4:611328 | 7.46E-132 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49181 | PF04770 | ZF-HD_dimer | 6.20E-29 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe03g00513 | - | - | csv:101204974 | 445.662 |