Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe03g00523 | ATGGAGGCGGCAGCTTTGGTACTGAAGAATGAGGAGAATCTGAGAATATGTTGGACAGGAGGTCAAGCTCAGGCCATAAGACGTGTAAAGAGACGGGGGAGAGAGCCTGCTGCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCGGATCAAACTAATAAACAACAGTGTGTGAAGCAACAATCCGATCAAGGTCCGACCACCACTATGAAGCGGAGTTCGAGATTTCGGGGGGTGAGCAGACATAGATGGACGGGTCGGTTTGAAGCTCATTTATGGGATAAGCTTTCTTGGAACATGACGCAGAAGAAGAAGGGAAAACAAGGAGCTTATGATGAAGAAGAATCAGCTGCAAGGGCTTATGATCTAGCAGCACTCAAAAAGAGCAGTGGCTTTTCAAGAGGTGTATCAAAGTATAGAGGAGTTGCAAGGCATCATCATAATGGTAGATGGGAAGCAAGAATAGGGAGAGTTTATGGGAACAAGTACCTGTATCTTGGAACTTACGGCACTCAAGAGGAAGCTGCTCGAGCTTACGATATGGCCGCCATTGAATACCGAGGGATCAATGCAGTCACCAACTTCGACTGGAGCAATTACATGGCTTGGCTAAAGCCTCCTCCAGTGCCACCCGCTGCCCTCAACGACGTCCATACGACGTCGAATCCCGACAAGGAACTCTGTAACTCCAGATCCATCCCAGTAGAAGAAACTTCATTGTTTGAAAACAATCACTACGACATTGATCTCTTCCATTCCCTTCAAAAGCAAGAACTTCTCGAGAGCTGTAGCACCCCGCTCAATGGTTATGCTAAATCATCTTCTCCATCAGCGCTCGACCTCCTTCTTCGGTCGTCATTTTTCAAGAAACTGGTTGAGATCAACTCAAATCTCTCTGTGGATGATGCTGATAATGGAGAAGAGACCAAGACTCATGTGCAGCTCAACAGTGTATTTGATGAGTTTGGAGACGTCTTCGGTGATAGACTTACAGATGAACCGTTCGTTTGCAGCTCGAACAAAGATCTGCAAGAAAGTGAGCTTCATTCATACTTTAATGGCATGTTTCATCGTTTCAAAGCAGCCTGA | 1086 | 47.61 | MEAAALVLKNEENLRICWTGGQAQAIRRVKRRGREPAAAAAAAAAAAADQTNKQQCVKQQSDQGPTTTMKRSSRFRGVSRHRWTGRFEAHLWDKLSWNMTQKKKGKQGAYDEEESAARAYDLAALKKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYGTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWLKPPPVPPAALNDVHTTSNPDKELCNSRSIPVEETSLFENNHYDIDLFHSLQKQELLESCSTPLNGYAKSSSPSALDLLLRSSFFKKLVEINSNLSVDDADNGEETKTHVQLNSVFDEFGDVFGDRLTDEPFVCSSNKDLQESELHSYFNGMFHRFKAA | 361 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 3083080 | 3087002 | + | Cp4.1LG03g08060.1 | Cpe03g00523 | 466240 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe03g00523 | 361 | ProSiteProfiles | AP2/ERF domain profile. | 137 | 195 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe03g00523 | 361 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 127 | 346 | - | - | |
Cpe03g00523 | 361 | PANTHER | BINDING PROTEIN, PUTATIVE-RELATED | 127 | 346 | - | - | |
Cpe03g00523 | 361 | PANTHER | BINDING PROTEIN, PUTATIVE-RELATED | 10 | 126 | - | - | |
Cpe03g00523 | 361 | Pfam | AP2 domain | 136 | 187 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe03g00523 | 361 | Pfam | AP2 domain | 73 | 127 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe03g00523 | 361 | CDD | AP2 | 73 | 126 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe03g00523 | 361 | SUPERFAMILY | DNA-binding domain | 136 | 197 | IPR016177 | GO:0003677 | |
Cpe03g00523 | 361 | MobiDBLite | consensus disorder prediction | 46 | 75 | - | - | |
Cpe03g00523 | 361 | CDD | AP2 | 136 | 197 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe03g00523 | 361 | Gene3D | AP2/ERF domain | 73 | 131 | IPR036955 | GO:0003700|GO:0006355 | |
Cpe03g00523 | 361 | Gene3D | AP2/ERF domain | 136 | 196 | IPR036955 | GO:0003700|GO:0006355 | |
Cpe03g00523 | 361 | PRINTS | Ethylene responsive element binding protein signature | 75 | 86 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe03g00523 | 361 | PRINTS | Ethylene responsive element binding protein signature | 177 | 197 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe03g00523 | 361 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 10 | 126 | - | - | |
Cpe03g00523 | 361 | MobiDBLite | consensus disorder prediction | 48 | 73 | - | - | |
Cpe03g00523 | 361 | ProSiteProfiles | AP2/ERF domain profile. | 74 | 126 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe03g00523 | 361 | SUPERFAMILY | DNA-binding domain | 73 | 128 | IPR016177 | GO:0003677 | |
Cpe03g00523 | 361 | SMART | rav1_2 | 137 | 201 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe03g00523 | 361 | SMART | rav1_2 | 74 | 129 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe03g00523 | Cpe04g00071 | CCT | |
Cpe03g00523 | Cpe04g00071 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g00523 | Cpe-Chr3:3083080 | Cpe18g00584 | Cpe-Chr18:6264092 | 1.16E-74 | dispersed | |
Cpe11g00748 | Cpe-Chr11:5951516 | Cpe03g00523 | Cpe-Chr3:3083080 | 1.94E-17 | transposed | |
Cpe03g00523 | Cpe-Chr3:3083080 | Cpe04g00071 | Cpe-Chr4:701290 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49184 | PF00847 | AP2 | 8.20E-09 | CL0081 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe03g00523 | - | - | cpep:111791316 | 702.205 |