Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00523 ATGGAGGCGGCAGCTTTGGTACTGAAGAATGAGGAGAATCTGAGAATATGTTGGACAGGAGGTCAAGCTCAGGCCATAAGACGTGTAAAGAGACGGGGGAGAGAGCCTGCTGCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCGGATCAAACTAATAAACAACAGTGTGTGAAGCAACAATCCGATCAAGGTCCGACCACCACTATGAAGCGGAGTTCGAGATTTCGGGGGGTGAGCAGACATAGATGGACGGGTCGGTTTGAAGCTCATTTATGGGATAAGCTTTCTTGGAACATGACGCAGAAGAAGAAGGGAAAACAAGGAGCTTATGATGAAGAAGAATCAGCTGCAAGGGCTTATGATCTAGCAGCACTCAAAAAGAGCAGTGGCTTTTCAAGAGGTGTATCAAAGTATAGAGGAGTTGCAAGGCATCATCATAATGGTAGATGGGAAGCAAGAATAGGGAGAGTTTATGGGAACAAGTACCTGTATCTTGGAACTTACGGCACTCAAGAGGAAGCTGCTCGAGCTTACGATATGGCCGCCATTGAATACCGAGGGATCAATGCAGTCACCAACTTCGACTGGAGCAATTACATGGCTTGGCTAAAGCCTCCTCCAGTGCCACCCGCTGCCCTCAACGACGTCCATACGACGTCGAATCCCGACAAGGAACTCTGTAACTCCAGATCCATCCCAGTAGAAGAAACTTCATTGTTTGAAAACAATCACTACGACATTGATCTCTTCCATTCCCTTCAAAAGCAAGAACTTCTCGAGAGCTGTAGCACCCCGCTCAATGGTTATGCTAAATCATCTTCTCCATCAGCGCTCGACCTCCTTCTTCGGTCGTCATTTTTCAAGAAACTGGTTGAGATCAACTCAAATCTCTCTGTGGATGATGCTGATAATGGAGAAGAGACCAAGACTCATGTGCAGCTCAACAGTGTATTTGATGAGTTTGGAGACGTCTTCGGTGATAGACTTACAGATGAACCGTTCGTTTGCAGCTCGAACAAAGATCTGCAAGAAAGTGAGCTTCATTCATACTTTAATGGCATGTTTCATCGTTTCAAAGCAGCCTGA 1086 47.61 MEAAALVLKNEENLRICWTGGQAQAIRRVKRRGREPAAAAAAAAAAAADQTNKQQCVKQQSDQGPTTTMKRSSRFRGVSRHRWTGRFEAHLWDKLSWNMTQKKKGKQGAYDEEESAARAYDLAALKKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYGTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWLKPPPVPPAALNDVHTTSNPDKELCNSRSIPVEETSLFENNHYDIDLFHSLQKQELLESCSTPLNGYAKSSSPSALDLLLRSSFFKKLVEINSNLSVDDADNGEETKTHVQLNSVFDEFGDVFGDRLTDEPFVCSSNKDLQESELHSYFNGMFHRFKAA 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3083080 3087002 + Cp4.1LG03g08060.1 Cpe03g00523 466240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00523 361 ProSiteProfiles AP2/ERF domain profile. 137 195 IPR001471 GO:0003700|GO:0006355
Cpe03g00523 361 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 127 346 - -
Cpe03g00523 361 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 127 346 - -
Cpe03g00523 361 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 10 126 - -
Cpe03g00523 361 Pfam AP2 domain 136 187 IPR001471 GO:0003700|GO:0006355
Cpe03g00523 361 Pfam AP2 domain 73 127 IPR001471 GO:0003700|GO:0006355
Cpe03g00523 361 CDD AP2 73 126 IPR001471 GO:0003700|GO:0006355
Cpe03g00523 361 SUPERFAMILY DNA-binding domain 136 197 IPR016177 GO:0003677
Cpe03g00523 361 MobiDBLite consensus disorder prediction 46 75 - -
Cpe03g00523 361 CDD AP2 136 197 IPR001471 GO:0003700|GO:0006355
Cpe03g00523 361 Gene3D AP2/ERF domain 73 131 IPR036955 GO:0003700|GO:0006355
Cpe03g00523 361 Gene3D AP2/ERF domain 136 196 IPR036955 GO:0003700|GO:0006355
Cpe03g00523 361 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Cpe03g00523 361 PRINTS Ethylene responsive element binding protein signature 177 197 IPR001471 GO:0003700|GO:0006355
Cpe03g00523 361 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 10 126 - -
Cpe03g00523 361 MobiDBLite consensus disorder prediction 48 73 - -
Cpe03g00523 361 ProSiteProfiles AP2/ERF domain profile. 74 126 IPR001471 GO:0003700|GO:0006355
Cpe03g00523 361 SUPERFAMILY DNA-binding domain 73 128 IPR016177 GO:0003677
Cpe03g00523 361 SMART rav1_2 137 201 IPR001471 GO:0003700|GO:0006355
Cpe03g00523 361 SMART rav1_2 74 129 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00523 Cpe04g00071 CCT
Cpe03g00523 Cpe04g00071 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00523 Cpe-Chr3:3083080 Cpe18g00584 Cpe-Chr18:6264092 1.16E-74 dispersed
Cpe11g00748 Cpe-Chr11:5951516 Cpe03g00523 Cpe-Chr3:3083080 1.94E-17 transposed
Cpe03g00523 Cpe-Chr3:3083080 Cpe04g00071 Cpe-Chr4:701290 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49184 PF00847 AP2 8.20E-09 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00523 - - cpep:111791316 702.205