Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00524 ATGATGGCAGGTTGGAGTATTAAGGCTGCCTTGGTGCTGCTTTCAATGGCTGTTCTTATGCCATCTCTCAGGGCTGGCATTGCTGAATATGATGACTTTTTGCTGCAACAGGCTGAAGAGGCCAAACAGGCTGCTCTTAAAGCTTACCACCCTCACCCCATGAATGTCACCGATCACTTTAACCATCATGTTTATTTGGCTTTAGAGGGAATTCAGGGAAACAATAGCACTAGGAGGAGCTTGAGGCAATACAAAGGACCGTGCTTGGCGACGAACCCGATCGATCGTTGCTGGCGTTGCGACCGAAATTGGGCCAACAACCGTAAGAAACTTGCCTATTGTGTTCTTGGTTTTGGCCGAAAAACCACCGGGGGATTAAGAGGACGTTTCTATACTGTCACCGATGCTTCGGACTCCGATGTCGTAGACCCTACACCCGGAACCCTCCGACATGCTGTTGTTCAAAAGCGGCCGTTGTGGATTATTTTTGGACGTAGCATGATCATTAGGCTATCCAAGGAACTGTTGGTGACTAGCGATAAGACCATTGATGCTCGTGGTGCCAATGTGCATATTGCTTATGGTGCTGGTATTAGCATTCAATTCTCCCGGAATGTGATCATCCATGGTCTTCACATCCACCACATTCTTTCGGCCACTGGCGGTATGATTCGAGACGCCGACGATCATGTCGGCCTTCGAACAGTCAGTGATGGCGATGGCATATCCATCTTTGGATCATCCAATGTCTGGCTCGATCATCTCTCCATGTCCAACTGCCAGGACGGCCTCATCGATGCCATCCAAGGCTCCACGGCTATCACCGTCTCAAACTCTCATTTCACTCATCACAACGACGTGATGCTGTTTGGTGCGAGTGATTCATTTGAAGGCGACTCGGTCATGCAAGTGACTGTCGCTTTCAACCATTTTGGTAAGGGATTGGTGCAGAGGATGCCGCGCTGCAGATGGGGATTCTTCCATGTTGTCAACAACGATTACACTCACTGGCTCATGTATGCCATTGGTGGCAGCCAACATCCCACCATTATCAGTCAAGGGAATCGTTTCATTGCCCCACCTAACCCTGCTGCAAAACAGATTACGAACAGAAACTACGCAACAGAGAGTGTATGGAAAACATGGACATGGAGATCGGAAGGGGATTTGTTGATGAACGGAGCGTATTTTGTTGAGTCTGGGGATCCAAGCAAGCAAAGGCCATACAGCAGGTTCGACATGATAAAGGCTAGGCCTGGCACTTTTGTTAGGAGGCTGACGCGCTTCTCTGGCTCGCTCAACTGTTATGTTGGTCGCCCATGCTAA 1326 49.25 MMAGWSIKAALVLLSMAVLMPSLRAGIAEYDDFLLQQAEEAKQAALKAYHPHPMNVTDHFNHHVYLALEGIQGNNSTRRSLRQYKGPCLATNPIDRCWRCDRNWANNRKKLAYCVLGFGRKTTGGLRGRFYTVTDASDSDVVDPTPGTLRHAVVQKRPLWIIFGRSMIIRLSKELLVTSDKTIDARGANVHIAYGAGISIQFSRNVIIHGLHIHHILSATGGMIRDADDHVGLRTVSDGDGISIFGSSNVWLDHLSMSNCQDGLIDAIQGSTAITVSNSHFTHHNDVMLFGASDSFEGDSVMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAAKQITNRNYATESVWKTWTWRSEGDLLMNGAYFVESGDPSKQRPYSRFDMIKARPGTFVRRLTRFSGSLNCYVGRPC 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3085060 3088479 - Cp4.1LG03g07950.1 Cpe03g00524 466241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00524 441 PRINTS Pollen allergen Amb family signature 114 131 IPR018082 -
Cpe03g00524 441 PRINTS Pollen allergen Amb family signature 138 163 IPR018082 -
Cpe03g00524 441 PRINTS Pollen allergen Amb family signature 174 190 IPR018082 -
Cpe03g00524 441 PRINTS Pollen allergen Amb family signature 238 259 IPR018082 -
Cpe03g00524 441 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Cpe03g00524 441 PRINTS Pollen allergen Amb family signature 340 359 IPR018082 -
Cpe03g00524 441 PRINTS Pollen allergen Amb family signature 382 406 IPR018082 -
Cpe03g00524 441 PRINTS Pollen allergen Amb family signature 412 435 IPR018082 -
Cpe03g00524 441 PANTHER PECTATE LYASE 18-RELATED 8 441 IPR045032 GO:0030570
Cpe03g00524 441 Pfam Pectate lyase 177 357 IPR002022 -
Cpe03g00524 441 PANTHER PECTATE LYASE 8 441 - -
Cpe03g00524 441 SUPERFAMILY Pectin lyase-like 92 431 IPR011050 -
Cpe03g00524 441 SMART amb_all 166 363 IPR002022 -
Cpe03g00524 441 Pfam Pectate lyase, N terminus 27 81 IPR007524 GO:0030570
Cpe03g00524 441 Gene3D - 91 434 IPR012334 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00524 Cpe04g00074 CCT
Cpe03g00524 Cpe04g00074 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00524 Cpe-Chr3:3085060 Cpe07g00605 Cpe-Chr7:4119676 0 dispersed
Cpe03g00524 Cpe-Chr3:3085060 Cpe04g00074 Cpe-Chr4:715832 0 wgd
Cpe03g00524 Cpe-Chr3:3085060 Cpe09g01067 Cpe-Chr9:9286487 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00524 K01728 - csv:101202789 786.949