Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe03g00524 | ATGATGGCAGGTTGGAGTATTAAGGCTGCCTTGGTGCTGCTTTCAATGGCTGTTCTTATGCCATCTCTCAGGGCTGGCATTGCTGAATATGATGACTTTTTGCTGCAACAGGCTGAAGAGGCCAAACAGGCTGCTCTTAAAGCTTACCACCCTCACCCCATGAATGTCACCGATCACTTTAACCATCATGTTTATTTGGCTTTAGAGGGAATTCAGGGAAACAATAGCACTAGGAGGAGCTTGAGGCAATACAAAGGACCGTGCTTGGCGACGAACCCGATCGATCGTTGCTGGCGTTGCGACCGAAATTGGGCCAACAACCGTAAGAAACTTGCCTATTGTGTTCTTGGTTTTGGCCGAAAAACCACCGGGGGATTAAGAGGACGTTTCTATACTGTCACCGATGCTTCGGACTCCGATGTCGTAGACCCTACACCCGGAACCCTCCGACATGCTGTTGTTCAAAAGCGGCCGTTGTGGATTATTTTTGGACGTAGCATGATCATTAGGCTATCCAAGGAACTGTTGGTGACTAGCGATAAGACCATTGATGCTCGTGGTGCCAATGTGCATATTGCTTATGGTGCTGGTATTAGCATTCAATTCTCCCGGAATGTGATCATCCATGGTCTTCACATCCACCACATTCTTTCGGCCACTGGCGGTATGATTCGAGACGCCGACGATCATGTCGGCCTTCGAACAGTCAGTGATGGCGATGGCATATCCATCTTTGGATCATCCAATGTCTGGCTCGATCATCTCTCCATGTCCAACTGCCAGGACGGCCTCATCGATGCCATCCAAGGCTCCACGGCTATCACCGTCTCAAACTCTCATTTCACTCATCACAACGACGTGATGCTGTTTGGTGCGAGTGATTCATTTGAAGGCGACTCGGTCATGCAAGTGACTGTCGCTTTCAACCATTTTGGTAAGGGATTGGTGCAGAGGATGCCGCGCTGCAGATGGGGATTCTTCCATGTTGTCAACAACGATTACACTCACTGGCTCATGTATGCCATTGGTGGCAGCCAACATCCCACCATTATCAGTCAAGGGAATCGTTTCATTGCCCCACCTAACCCTGCTGCAAAACAGATTACGAACAGAAACTACGCAACAGAGAGTGTATGGAAAACATGGACATGGAGATCGGAAGGGGATTTGTTGATGAACGGAGCGTATTTTGTTGAGTCTGGGGATCCAAGCAAGCAAAGGCCATACAGCAGGTTCGACATGATAAAGGCTAGGCCTGGCACTTTTGTTAGGAGGCTGACGCGCTTCTCTGGCTCGCTCAACTGTTATGTTGGTCGCCCATGCTAA | 1326 | 49.25 | MMAGWSIKAALVLLSMAVLMPSLRAGIAEYDDFLLQQAEEAKQAALKAYHPHPMNVTDHFNHHVYLALEGIQGNNSTRRSLRQYKGPCLATNPIDRCWRCDRNWANNRKKLAYCVLGFGRKTTGGLRGRFYTVTDASDSDVVDPTPGTLRHAVVQKRPLWIIFGRSMIIRLSKELLVTSDKTIDARGANVHIAYGAGISIQFSRNVIIHGLHIHHILSATGGMIRDADDHVGLRTVSDGDGISIFGSSNVWLDHLSMSNCQDGLIDAIQGSTAITVSNSHFTHHNDVMLFGASDSFEGDSVMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAAKQITNRNYATESVWKTWTWRSEGDLLMNGAYFVESGDPSKQRPYSRFDMIKARPGTFVRRLTRFSGSLNCYVGRPC | 441 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 3085060 | 3088479 | - | Cp4.1LG03g07950.1 | Cpe03g00524 | 466241 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe03g00524 | 441 | PRINTS | Pollen allergen Amb family signature | 114 | 131 | IPR018082 | - | |
Cpe03g00524 | 441 | PRINTS | Pollen allergen Amb family signature | 138 | 163 | IPR018082 | - | |
Cpe03g00524 | 441 | PRINTS | Pollen allergen Amb family signature | 174 | 190 | IPR018082 | - | |
Cpe03g00524 | 441 | PRINTS | Pollen allergen Amb family signature | 238 | 259 | IPR018082 | - | |
Cpe03g00524 | 441 | PRINTS | Pollen allergen Amb family signature | 318 | 337 | IPR018082 | - | |
Cpe03g00524 | 441 | PRINTS | Pollen allergen Amb family signature | 340 | 359 | IPR018082 | - | |
Cpe03g00524 | 441 | PRINTS | Pollen allergen Amb family signature | 382 | 406 | IPR018082 | - | |
Cpe03g00524 | 441 | PRINTS | Pollen allergen Amb family signature | 412 | 435 | IPR018082 | - | |
Cpe03g00524 | 441 | PANTHER | PECTATE LYASE 18-RELATED | 8 | 441 | IPR045032 | GO:0030570 | |
Cpe03g00524 | 441 | Pfam | Pectate lyase | 177 | 357 | IPR002022 | - | |
Cpe03g00524 | 441 | PANTHER | PECTATE LYASE | 8 | 441 | - | - | |
Cpe03g00524 | 441 | SUPERFAMILY | Pectin lyase-like | 92 | 431 | IPR011050 | - | |
Cpe03g00524 | 441 | SMART | amb_all | 166 | 363 | IPR002022 | - | |
Cpe03g00524 | 441 | Pfam | Pectate lyase, N terminus | 27 | 81 | IPR007524 | GO:0030570 | |
Cpe03g00524 | 441 | Gene3D | - | 91 | 434 | IPR012334 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe03g00524 | Cpe04g00074 | CCT | |
Cpe03g00524 | Cpe04g00074 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g00524 | Cpe-Chr3:3085060 | Cpe07g00605 | Cpe-Chr7:4119676 | 0 | dispersed | |
Cpe03g00524 | Cpe-Chr3:3085060 | Cpe04g00074 | Cpe-Chr4:715832 | 0 | wgd | |
Cpe03g00524 | Cpe-Chr3:3085060 | Cpe09g01067 | Cpe-Chr9:9286487 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe03g00524 | K01728 | - | csv:101202789 | 786.949 |