Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00554 TCCAAGAAATGGAAAACCACCAGATTCTGTCAAAACCCAAACTGGGCTTCTCTGCTTCATTCAGAGAAGCCTTCAAAATCCTCTTTAATCATCCAAACTTCATCTCTCTCATTATCTTCATCTCTCTCCCCCTCTTGGCCTCCCTCTCAGCCCACAACATTCTTCTTCACCCAACCTTCATTCAACTTCTCAGCACTCATCTTCTTCCTTGACCTTCTCAACACAATTGCAATAGTCTCCATATCAGCAGCATTGTATGGAGGAAACTCTCAAATGGGTTTTAAAGAGATGCTAGTTCAAGTCAGGAAGATGGTGGCTTTGAAACTCAGAGGGTCATTGGCTACATCTCTATGCTCTGTTTTGTTGGCTTCACTCACTCTGTTGGGCTTGGTTGCTTTGTCAAAAGACTTCTTTTTTGTGGCTACAGGCAGCTCTCACATCTCAATAACAAACACCTTCCNTAGTTGCTTTGTCAAAAGACTTCTTTTTTATGGCTACAGGCAGCTCTCACATCTCAATAACAAACACCTTCCTCTTACAACTTTTCATCTTCACATTCATCATTGGGACACCTTTTGTGGTTTTTATGTAGAGTGGAGTGCTGTTTGGAATATGGGGATTGTTATCTCAATCTTGGATAAGAACCAGGGGTATATAGCCATAGGAGTGGCATCATATCTTAGCAGAGGTAGCAGAAAGCTTGGGTTCAGTTTGATGATGGTGGTTTTTGGGTTTCCATGTCTATATGCTTTGTGGAATGAGAGAAGTTGTGGGGTTTGGGAGAATGTGGTGTTTGTGAGCTTGAACGGTGTGGGGAATGTTGTGATAGAAGCCTTCAAAATCCTCTTTAATCATCCAAACTTCATCTCCCTCGTCCTCATCTCCTCCTTCCCCCTCTTCGCCTCCCTCCTCGCCCACCACATTCTCCTTCACCCAACCTTCATTCAACTCCTCAAACTTCTCTCAGAAGAAAATCCATCTGATCCATCTCCAAGGTACATCATCAGGTGTCGATTAGATGGCAGCACAGCCTGCATCTCGCAGCGCTCCTCTGATGACAACAACTTCAAAGCAACTCTCTCCCACAAGTTTCTGATATCAACTCTCATCTCTTCAGCACTCATCTTCTTCCTAGACCTTCTCTCCACAATCTCAACAGTATCTATATCAGCAGCAATATATGGAGGAAACTCCCAAATGGGTTTCAAACAGATGCTAGTTGAAGTCAGAAAGCGAGTGGCTGTAAGACTGAGAGGCTCATTGGCAACATCTCTGTATGCTCTTATACTTGCTTCACTAACTCTATTGGTGGCTCTAAGACTGAGAGGCTCATTGGCAACATCTCTGTATGCTCTTTTATTTGCTTCACTAACTCTATTGGGTTTAATCGCTTTGTCAACAAACATGTTTTTGATGCCAAAAAGCTCATTTATCTTTGGGACAATCTTTGTATTTCTGTTGACAAAATTCATAGAGTGGAGCGCTATTTGGAACATGGGAATTGTTATCTCAATCTTGGATAAGAACCATGGCTACATAGCAATTGGAGTGGCAGCATATCTAAGCAGAGGCAGGAGGAAGTTAGGGCTAAGTTTGATGCTGGTTTTCTTTGCTTTGAAGGTGGCTCTTGGGCTGCCATGTCTCTATGCTTTGTGGAATCAGGGGAGTTGTGGGGCATTGGGGAATGTGGTGTCCGTGAGTTTCAAGTGTGTGGGGGATATTCTAATGTGGATTGTTCTTATGGTTTATTTCTATGACTGTAAGAGGCAGTTTCTGGAGAAGAAGATCGATTTGGAGAATAATGTCCGCCATGGAAGCCTGCAAATTGGAGAGAAAACCGCCATGGCCAAGAATCAATGTTCTTGGCTATTACACGTCCAATTGGCCTCTCCACGATTTTCGCTTGCACCAACCCAATTACATCCCCATTTCCTCCTAAATTTCTCATTTCTTTCTTCTTCTTCCGATCTCCATCAACCCTCAATCTCTTCGCCGGCGTCCAAGTTCCGCCCCTTTCGGCGATACCTTGACGGCTCGTCCACCGATAAGACTACCGGCGTGGCGACCGCCACGGACGAACACCCTAATTACATCCTCCTCCGTTACCAAATCCTCGACCCTGACAGCGACATTGTCGCGCAATGGAATCGCTTGTTTCTAGTGACATGCCTGATTGCGCTATTCATCGATCCGATGTATTTCTACACGTCGTCTGTCGGGGGACCTGCCTGCCTGACATCGGAGGTGAATCTGGGAATAGTGATCACGTTCTTCAGAACGGTGATGGATCTGTTCTTCTTGCTGCACATGGTGCTCAAGTTTCGAACCGCGTATGTCGCTCCGAGCTCTAGGGTTTTTGGAAGGGGAGAGCTGGTTATGGATGCCAGAGCCATTGCAAAGCGCTATTTGAAATCTGATTTTGTGATTGATCTCGCCGCCACTCTCCCCCTCCCACAAATAGTGATGTGGTTGGTGATTCCAGCAACAAGACATTCAAGGGTGGATCATGCCAACAACACAATCGCTCTCCTTGTTCTTCTCCAATACGTTCCAAGGCTGTTCCTCATCTTCCCTCTCAACCAACGCATCATCAAAACCACTGGCGTTGTTGCCAAAACTGCCTGGGCTGGTGCTGCCTACAATCTCATCCTCTACATGCTTGCCAGTCATGTAACAACACCATATCTCGTCTCTCTACGTTCATCTTTACGTCATCTCGGGAGACAGTTCGCATGCTGGAAATCGGAGTGTGCAAAGGAAAATGCGTCCAAAGTTCTAACATGTCTTCCCATCTTCTTGGATTGCAACAGTTTGAATGACACTGACAGACAATATTGGCTGAATGTCACTCATGTTACTTCCAAATGCGATCCAAGGAATGAAAACATTAGGTTCAAATTTGGAATGTTCTCTGATGCTTTCACCAGTGATGTTGCCTCCTCCCATTTCATTGCTAAGTACTTTTATTGTCTTTGGTGGGGCCTCAGAAATTTAAGTTCTTACGGACAAACTTTGGACACAACAACTTACCTTGGCGAGACATTATTTTGCATATCAACGTGCATAGTTGGGTTGATACTATTTTCACAACTCATTGGCAATATGCAGCTTCTGTTTCCCATTTTGAAGACATATTTGCAGTCAATGACAGTAAGACTCGAAGAATGGAGGATAAAGAGAAGGGACACTGAAGAATGGATGCGACGTCGGAGACAGTTCGCATGCTGGAAATCGGAGTGTGCAAAGGAAAATGCGTCCAAAGTTCTAACATGTCTTCCCATCTTCTTGGATTGCAACAGTTTGAATGACACTGACAGACAATATTGGCTGAATGTCACTCATGTTACTTCCAAATGCGATCCAAGGAATGAAAACATTAGGTTCAAATTTGGAATGTTCTCTGATGCTTTCACCAGTGATGTTGCCTCCTCCCATTTCATTGCTAAGTACTTTTATTGTCTTTGGTGGGGCCTCAGAAATTTAAGTTCTTACGGACAAACTTTGGACACAACAACTTACCTTGGCGAGACATTATTTTGCATATCAACGTGCATAGTTGGGTTGATACTATTTTCACAACTCATTGGCAATATGCAGACATATTTGCAGTCAATGACAGTAAGACTCGAAGAATGGAGGATAAAGAGAAGGGACACTGAAGAATGGATGCGACGTCGTCAATTACCACCAGATTTGCAAGAACGAGTTCGACGATTCGTTCAATATAAATGGCAGGCCACGAGAGGAGTTAATGAAGAATCCATATTGCGTTCATTGCCCATTGACCTTCGCCGTGAGATTCAACAACATTTGTGTTTGTCGCTCGTTCGTCGTGTTCCTTTCTTCTCACAAATGGACGATCAACTTCTCGATGCCATATGCGAGCGCCTCGTCTCGTCCTTGTGTACTCAAGGAACGTATATCGTGCGAGAGGATGACCCAGTTAACGAAATGTTGTTTATTATAAGAGGACAACTAGAGAGCTCCACAACAAATGGCGGTCGTTCTGGCTTTTTCAACTCAATCACATTAAAACCAGGTGATTTTTGTGGTGAAGAACTATTGACATGGGCTTTGATGCCAAGTTCCAGTTTGAATATGCCTTCTTCTACTCGAACCGTCCGAGCACGTACAGAAGTTGAAGCCTTCGCCCTTCGAGCTGAAGATCTCAAGTTCGTCGCCGGACAATTCAAACGCCTGCATAGCAAGAAACTACAACATGCCTTTAGATACTATTCCCATCAATGGAGGACCTGGGGTGCTTGCTTAATTCAAGTAGCTTGGAGGAGGCTTAAGAAGAGAAAATTGGCAAAGAAATCAGTATTCAGAAACAGCTTAAGCTATGGAGATTCAATACAAGAAGATATCGAATACGACGTCGAGCTAGCAGAAGAACACTACGACCACGACGACGACGACAGTGATGAGGACATGTCTACTGCAGACTACATGAACAAAACTCAGCATCTAGGTGCTACACTTTTGGCTTCAAAGTTTGCTGCCAATACTAGAAAAGGAGTTCATCTAAAAGCCCAAAAATCCAAAGCTTCTAGTTTGAAAATGCCAAAGTTGTTTAAACCAGATGAACCTGATTTTTCTATGGATGGA 4608 43.99 SKKWKTTRFCQNPNWASLLHSEKPSKSSLIIQTSSLSLSSSLSPSWPPSQPTTFFFTQPSFNFSALIFFLDLLNTIAIVSISAALYGGNSQMGFKEMLVQVRKMVALKLRGSLATSLCSVLLASLTLLGLVALSKDFFFVATGSSHISITNTFXSCFVKRLLFYGYRQLSHLNNKHLPLTTFHLHIHHWDTFCGFYVEWSAVWNMGIVISILDKNQGYIAIGVASYLSRGSRKLGFSLMMVVFGFPCLYALWNERSCGVWENVVFVSLNGVGNVVIEAFKILFNHPNFISLVLISSFPLFASLLAHHILLHPTFIQLLKLLSEENPSDPSPRYIIRCRLDGSTACISQRSSDDNNFKATLSHKFLISTLISSALIFFLDLLSTISTVSISAAIYGGNSQMGFKQMLVEVRKRVAVRLRGSLATSLYALILASLTLLVALRLRGSLATSLYALLFASLTLLGLIALSTNMFLMPKSSFIFGTIFVFLLTKFIEWSAIWNMGIVISILDKNHGYIAIGVAAYLSRGRRKLGLSLMLVFFALKVALGLPCLYALWNQGSCGALGNVVSVSFKCVGDILMWIVLMVYFYDCKRQFLEKKIDLENNVRHGSLQIGEKTAMAKNQCSWLLHVQLASPRFSLAPTQLHPHFLLNFSFLSSSSDLHQPSISSPASKFRPFRRYLDGSSTDKTTGVATATDEHPNYILLRYQILDPDSDIVAQWNRLFLVTCLIALFIDPMYFYTSSVGGPACLTSEVNLGIVITFFRTVMDLFFLLHMVLKFRTAYVAPSSRVFGRGELVMDARAIAKRYLKSDFVIDLAATLPLPQIVMWLVIPATRHSRVDHANNTIALLVLLQYVPRLFLIFPLNQRIIKTTGVVAKTAWAGAAYNLILYMLASHVTTPYLVSLRSSLRHLGRQFACWKSECAKENASKVLTCLPIFLDCNSLNDTDRQYWLNVTHVTSKCDPRNENIRFKFGMFSDAFTSDVASSHFIAKYFYCLWWGLRNLSSYGQTLDTTTYLGETLFCISTCIVGLILFSQLIGNMQLLFPILKTYLQSMTVRLEEWRIKRRDTEEWMRRRRQFACWKSECAKENASKVLTCLPIFLDCNSLNDTDRQYWLNVTHVTSKCDPRNENIRFKFGMFSDAFTSDVASSHFIAKYFYCLWWGLRNLSSYGQTLDTTTYLGETLFCISTCIVGLILFSQLIGNMQTYLQSMTVRLEEWRIKRRDTEEWMRRRQLPPDLQERVRRFVQYKWQATRGVNEESILRSLPIDLRREIQQHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLCTQGTYIVREDDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLKPGDFCGEELLTWALMPSSSLNMPSSTRTVRARTEVEAFALRAEDLKFVAGQFKRLHSKKLQHAFRYYSHQWRTWGACLIQVAWRRLKKRKLAKKSVFRNSLSYGDSIQEDIEYDVELAEEHYDHDDDDSDEDMSTADYMNKTQHLGATLLASKFAANTRKGVHLKAQKSKASSLKMPKLFKPDEPDFSMDG 1536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3258098 3265945 + Cp4.1LG03g07710.1 Cpe03g00554 466271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00554 1536 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1071 1534 - -
Cpe03g00554 1536 Gene3D Helix hairpin bin 1209 1272 - -
Cpe03g00554 1536 MobiDBLite consensus disorder prediction 1511 1536 - -
Cpe03g00554 1536 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 694 1070 - -
Cpe03g00554 1536 Gene3D Jelly Rolls 1279 1399 IPR014710 -
Cpe03g00554 1536 Pfam Ion transport protein 715 1036 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cpe03g00554 1536 Pfam Ion transport protein 1119 1208 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cpe03g00554 1536 Pfam Cyclic nucleotide-binding domain 1304 1391 IPR000595 -
Cpe03g00554 1536 Gene3D - 719 1040 - -
Cpe03g00554 1536 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 18 1071 1534 - -
Cpe03g00554 1536 SUPERFAMILY Voltage-gated potassium channels 1144 1245 - -
Cpe03g00554 1536 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 18 694 1070 - -
Cpe03g00554 1536 SUPERFAMILY cAMP-binding domain-like 1211 1406 IPR018490 -
Cpe03g00554 1536 SUPERFAMILY Voltage-gated potassium channels 706 1039 - -
Cpe03g00554 1536 CDD CAP_ED 1281 1412 IPR000595 -
Cpe03g00554 1536 ProSiteProfiles cAMP/cGMP binding motif profile. 1281 1411 IPR000595 -
Cpe03g00554 1536 SMART cnmp_10 1281 1412 IPR000595 -
Cpe03g00554 1536 MobiDBLite consensus disorder prediction 1522 1536 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00554 Cpe-Chr3:3258098 Cpe04g01281 Cpe-Chr4:10588515 4.59E-144 dispersed
Cpe18g00838 Cpe-Chr18:7736171 Cpe03g00554 Cpe-Chr3:3258098 1.73E-85 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00554 K05391 - csv:101216651 822.772