Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00557 ATGGAATCTGGGCGGTTCTTGTTTAATCCGCCGCCTTGCGGTGGCAACATGCTTTACCTTGGCGGAGCCGGTAGCGATCCTGTTCTGCGAGGAGGAAGAACAATGATTAGTATGACTATGCATGAGAGTCCAAAGGGGAGGCCATTTTTTCGATCACCGGACGATCTTTACGATGATGAATATTACGACGAGTTCTACCCTGAGAAGAAGCGTCGTCTCACCCATGATCAGGTTCAAATGTTGGAGAAGAGCTTTGATGAAGAGAACAAACTGGAGCCAGAGAGGAAGTCCCAACTGGCCAAGAAGTTGGGGCTGCAACCAAGGCAGGTGGCTGTGTGGTTCCAGAATCGTCGTGCTCGATGGAAGACAAAGCAGCTCGAAAGGGACTATGATGTTCTTAAAGCTTCATATGATTTGCTTCTGTCTAACTATGACTCAGTTATCAAAGAGAATGCAGATCTTAAATCTCAGGTGACTTCCTTAACTGAGAAATTTCTGGCTAAAGAGCTGGATGGAGGAGGAGAAGCACCAATTCCATGTGTGACATCAGAGCCTCTTCTAGCAGACATTGGCCATGTCTCCGCCCCACACTCCAGCAGAAAGGCTGAAGATCGTCTCAGTTCAGGGAGCGATGGCAGTACGGTGATCGACGATAATTGTCGACAACTCATTGATTGCTGTGATTCTTACTTCCCCAGCAACGAGTATCTGCAATGTGCACCTCTGCCTAATGGGTTGCAAATGGAACATGATGATAGCAATAACAATAGCAACTACTTGTTCTCAGACATGTTTGCAGTAACAGGCCAACAAAATCAGGAGGGAATGGGAGGGCCTCCTGCTTGGTGGACATGGCCTTAG 861 47.74 MESGRFLFNPPPCGGNMLYLGGAGSDPVLRGGRTMISMTMHESPKGRPFFRSPDDLYDDEYYDEFYPEKKRRLTHDQVQMLEKSFDEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDLLLSNYDSVIKENADLKSQVTSLTEKFLAKELDGGGEAPIPCVTSEPLLADIGHVSAPHSSRKAEDRLSSGSDGSTVIDDNCRQLIDCCDSYFPSNEYLQCAPLPNGLQMEHDDSNNNSNYLFSDMFAVTGQQNQEGMGGPPAWWTWP 286
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 3293854 3298165 - Cp4.1LG03g07630.1 Cpe03g00557 466274
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00557 286 SMART HOX_1 67 128 IPR001356 GO:0003677
Cpe03g00557 286 PRINTS Lambda-repressor HTH signature 95 104 IPR000047 GO:0003677
Cpe03g00557 286 PRINTS Lambda-repressor HTH signature 104 120 IPR000047 GO:0003677
Cpe03g00557 286 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 252 IPR045224 GO:0003700
Cpe03g00557 286 Coils Coil 144 164 - -
Cpe03g00557 286 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 252 - -
Cpe03g00557 286 Pfam Homeodomain 69 122 IPR001356 GO:0003677
Cpe03g00557 286 Gene3D - 64 130 - -
Cpe03g00557 286 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981|GO:0006355
Cpe03g00557 286 CDD homeodomain 69 125 IPR001356 GO:0003677
Cpe03g00557 286 SUPERFAMILY Homeodomain-like 65 126 IPR009057 -
Cpe03g00557 286 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677
Cpe03g00557 286 Pfam Homeobox associated leucine zipper 124 164 IPR003106 GO:0006355|GO:0043565
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cpe01g02355 Cpe03g00557 CCT
Cpe03g00557 Cpe13g00908 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00557 Cpe-Chr3:3293854 Cpe20g00203 Cpe-Chr20:1171178 6.41E-42 dispersed
Cpe01g02355 Cpe-Chr1:19722842 Cpe03g00557 Cpe-Chr3:3293854 3.38E-63 wgd
Cpe13g00908 Cpe-Chr13:7748511 Cpe03g00557 Cpe-Chr3:3293854 4.45E-79 wgd
Cpe03g00557 Cpe-Chr3:3293854 Cpe04g00557 Cpe-Chr4:5986887 1.41E-151 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49188 PF00046 Homeodomain 2.40E-18 CL0123 Cpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00557 K09338 - csv:101212142 466.077