Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe03g00557 | ATGGAATCTGGGCGGTTCTTGTTTAATCCGCCGCCTTGCGGTGGCAACATGCTTTACCTTGGCGGAGCCGGTAGCGATCCTGTTCTGCGAGGAGGAAGAACAATGATTAGTATGACTATGCATGAGAGTCCAAAGGGGAGGCCATTTTTTCGATCACCGGACGATCTTTACGATGATGAATATTACGACGAGTTCTACCCTGAGAAGAAGCGTCGTCTCACCCATGATCAGGTTCAAATGTTGGAGAAGAGCTTTGATGAAGAGAACAAACTGGAGCCAGAGAGGAAGTCCCAACTGGCCAAGAAGTTGGGGCTGCAACCAAGGCAGGTGGCTGTGTGGTTCCAGAATCGTCGTGCTCGATGGAAGACAAAGCAGCTCGAAAGGGACTATGATGTTCTTAAAGCTTCATATGATTTGCTTCTGTCTAACTATGACTCAGTTATCAAAGAGAATGCAGATCTTAAATCTCAGGTGACTTCCTTAACTGAGAAATTTCTGGCTAAAGAGCTGGATGGAGGAGGAGAAGCACCAATTCCATGTGTGACATCAGAGCCTCTTCTAGCAGACATTGGCCATGTCTCCGCCCCACACTCCAGCAGAAAGGCTGAAGATCGTCTCAGTTCAGGGAGCGATGGCAGTACGGTGATCGACGATAATTGTCGACAACTCATTGATTGCTGTGATTCTTACTTCCCCAGCAACGAGTATCTGCAATGTGCACCTCTGCCTAATGGGTTGCAAATGGAACATGATGATAGCAATAACAATAGCAACTACTTGTTCTCAGACATGTTTGCAGTAACAGGCCAACAAAATCAGGAGGGAATGGGAGGGCCTCCTGCTTGGTGGACATGGCCTTAG | 861 | 47.74 | MESGRFLFNPPPCGGNMLYLGGAGSDPVLRGGRTMISMTMHESPKGRPFFRSPDDLYDDEYYDEFYPEKKRRLTHDQVQMLEKSFDEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDLLLSNYDSVIKENADLKSQVTSLTEKFLAKELDGGGEAPIPCVTSEPLLADIGHVSAPHSSRKAEDRLSSGSDGSTVIDDNCRQLIDCCDSYFPSNEYLQCAPLPNGLQMEHDDSNNNSNYLFSDMFAVTGQQNQEGMGGPPAWWTWP | 286 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 3293854 | 3298165 | - | Cp4.1LG03g07630.1 | Cpe03g00557 | 466274 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe03g00557 | 286 | SMART | HOX_1 | 67 | 128 | IPR001356 | GO:0003677 | |
| Cpe03g00557 | 286 | PRINTS | Lambda-repressor HTH signature | 95 | 104 | IPR000047 | GO:0003677 | |
| Cpe03g00557 | 286 | PRINTS | Lambda-repressor HTH signature | 104 | 120 | IPR000047 | GO:0003677 | |
| Cpe03g00557 | 286 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 1 | 252 | IPR045224 | GO:0003700 | |
| Cpe03g00557 | 286 | Coils | Coil | 144 | 164 | - | - | |
| Cpe03g00557 | 286 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 | 1 | 252 | - | - | |
| Cpe03g00557 | 286 | Pfam | Homeodomain | 69 | 122 | IPR001356 | GO:0003677 | |
| Cpe03g00557 | 286 | Gene3D | - | 64 | 130 | - | - | |
| Cpe03g00557 | 286 | ProSitePatterns | 'Homeobox' domain signature. | 99 | 122 | IPR017970 | GO:0000981|GO:0006355 | |
| Cpe03g00557 | 286 | CDD | homeodomain | 69 | 125 | IPR001356 | GO:0003677 | |
| Cpe03g00557 | 286 | SUPERFAMILY | Homeodomain-like | 65 | 126 | IPR009057 | - | |
| Cpe03g00557 | 286 | ProSiteProfiles | 'Homeobox' domain profile. | 64 | 124 | IPR001356 | GO:0003677 | |
| Cpe03g00557 | 286 | Pfam | Homeobox associated leucine zipper | 124 | 164 | IPR003106 | GO:0006355|GO:0043565 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe01g02355 | Cpe03g00557 | CCT | |
| Cpe03g00557 | Cpe13g00908 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe03g00557 | Cpe-Chr3:3293854 | Cpe20g00203 | Cpe-Chr20:1171178 | 6.41E-42 | dispersed | |
| Cpe01g02355 | Cpe-Chr1:19722842 | Cpe03g00557 | Cpe-Chr3:3293854 | 3.38E-63 | wgd | |
| Cpe13g00908 | Cpe-Chr13:7748511 | Cpe03g00557 | Cpe-Chr3:3293854 | 4.45E-79 | wgd | |
| Cpe03g00557 | Cpe-Chr3:3293854 | Cpe04g00557 | Cpe-Chr4:5986887 | 1.41E-151 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 49188 | PF00046 | Homeodomain | 2.40E-18 | CL0123 | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe03g00557 | K09338 | - | csv:101212142 | 466.077 |