Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00561 ATGGCGATGAAGCAGGCAGCTAGAGCAGCGATTCGAGCCTTTTCTTCCTCTGTAACCTCTCAGTCGTCACCTCTCGTCAGGCACCTTCATGCTTCTGCAGGGAGCAAGAAGATCGTTGGTGTGTTTTACAAGGCTAATGAGTATGCTGCTATGAACCCTAATTTCGTGGGATGTGTGGAGGGATCCTTGGGCATACGCGAATGGTTGGAATCTCAAGGGCATAAGTATATAGTCACTGATGATAAGGAAGGACTCAATTGTGAGCTTGAAAAGCACATTCCAGATCTCCATGTTCTCATAACAACTCCCTTCCATCCTGCCTACGTAACTGCTGAAAGGATCAAAAAAGCCAAAAACTTGCAGTTGCTTCTCACGGCTGGAATTGGGTCTGATCATGTTGACCTCAATGCTGCAGCTGCTGCTGGGCTAACAGTTGCCGAGGTTACCGGAAGCAATGTGGTTTCAGTTGCAGAGGATGAGCTAATGAGAATTCTCATTCTCGTCAGGAATTTCCTACCAGGACACCACCAGGTTATTAATGGTCAATGGAATGTTGCTGGGATAGCTCACAGAGCTTACGATCTTGAGGGGAAGACAATTGGGACCGTAGGCGCTGGACGAATTGGAAAACTTTTACTTCAAAGGCTGAAACCTTTCAATTGCAATCTCCTCTATCACGACCGACTCAAGATTGACCCTGAACTTGAGAAGCAGATTGGATCAAAGTTTGAGGAGGACATGGATGCAATGCTACCAAAATGCGATGTACTTGTCATCAACACTCCTCTAACTGACAAGACAAGGGGATTATTTAACAAAGAGAGAATTGCCAAATGCAAGAAAGGAGTACTTATTGTTAACAATGCTCGAGGAGCAATTATGGACACTGAAGCGGTCGTTGACGCTTGTAACAGTGGACACATTGGAGGTTACAGTGGTGATGTGTGGAACCCGCAACCAGCTCCAAAAGACCATCCATGGCGTTACATGCCAAACCAAGCCATGACACCTCATATTTCTGGCACCACCATAGATGCACAGTTGCGATACGCTGCCGGAGTGAAGGACATGCTTGATAGGTACTTCAAAGGACAGAACTTTCCTGCTCAAAACTACATCGTCAAGGAAGGAGAACTCGCCCCTCAAAGAGAGAAAAGGACGACGATAATGGCGATGAAGCAGGCAGCTACAGCAGCGATTCGAGCTTTTTCTTCCTCTGTACCTTCTCAGTCATCACCTCTCGTCAGGCACCTTCATGCTTCTGCAGGGAGCAAGAAGATCGTCGGTGTGTTTTACAAGGCTAATGAGTATGCTGCTATGAACCCTAATTTCGTGGGATGTGTGGAGGGATCCTTGGGCATACGCGAATGGTTGGAATCTCAAGGGCATCAGTATATAGTCACTGATGATAAGGAAGGACTCAATTGTGAGCTTGAAAAGCACATTCCAGATCTCCACGTTCTCATAACAACTCCCTTCCATCCTGCCTACGTAACTGCTGAAAGGATAAAAAAAGCCAAAAACTTGGAGTTGCTTCTCACGGCTGGAATTGGGTCTGATCATGTTGACCTCAATGCAGCAGCTGCAGCTGGACTGACAGTTGCCGAGGTTACCGGAAGCAATGTGGTTTCAGTTGCAGAGGATGAGCTAATGAGAATTCTCATTCTCGTCAGGAATTTCCTACCAGGACACCACCAGGTTATTAAAGGTGAATGGAATGTTGCTGGGATAGCTCACAGAGCTTATGATCTTGAGGGGAAGACAATTGGGACCGTAGGTGCTGGACGAATTGGAAAACTTTTACTCCAAAGGCTGAAACCTTTCAACTGCAATCTCCTCTATCACGACCGACTCAAGATTGACCCTGAACTTGAGAAGCAGATTGGAGCAAAGTTTGAGGAGGACATGGATGCAATGCTACCAAAATGCGATGTACTTGTCATCAACACTCCTCTAACTGACAAGACAAGGGGATTATTTAACAAAGAGAGAATTGCCAAATGCAAGAAAGGAGTACTAATTGTTAACAATGCTCGAGGAGCAATTATGGACACTGAAGCGGTCGTTGACGCTTGTAACAGTGGACACATTGGAGGTTACAGTGGTGATGTGTGGAACCCGCAACCAGCTCCAAAAGACCATCCATGGCGTTACATGCCAAACCAAGCCATGACACCTCATATTTCTGGCACCACCATTGATGCACAGTTGCGATATGCTGCGGGAGTGAAGGACATGCTTGATAGGTACTTCAAAGGACAGGACTTTCCTGCTCAAAACTACATCGTCAAGGAAGGAGAACTTGCCCCTCAGTACCGAATGAATGCATCTCATCATAATGTAATTCCATCTGGAATGGATATCTATGGTGAAAGTGGAGATGGGTATGTGAGGGCGGATCAGATAGATCTGAAGAGCTTAGACGAGCAGTTTCAGAGACATTTGAGCAAAGCATGGACCAAGGAGAAGAACAAGAGGAAGGACGACGAGGAAGGCGGCGGCGGAAGAAGGCCGGGAATCACCAGGCAGGAGTGGGAGATTGACCCTTCTAAACTCATCGTCAAAGCCGTCATAGCTCGTGGCACTTTTGGAACTGTTCATCGTGGAATTTATGATGGCCGAGATGTTGCTGTTAAATTTCTTGACTGGGGGGAAGAGGGTCATAGGTCGGAGGCAGAAATCGCTTCTCTTAGAGCAACTTTTACCCAAGAAGTTGCTCTCTGGCACAACAAGCTTGAGCATCCACATGTTACCGAGGGAAGATTCTATGGCGTTATTTCTAAA 2784 46.55 MAMKQAARAAIRAFSSSVTSQSSPLVRHLHASAGSKKIVGVFYKANEYAAMNPNFVGCVEGSLGIREWLESQGHKYIVTDDKEGLNCELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLQLLLTAGIGSDHVDLNAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVINGQWNVAGIAHRAYDLEGKTIGTVGAGRIGKLLLQRLKPFNCNLLYHDRLKIDPELEKQIGSKFEEDMDAMLPKCDVLVINTPLTDKTRGLFNKERIAKCKKGVLIVNNARGAIMDTEAVVDACNSGHIGGYSGDVWNPQPAPKDHPWRYMPNQAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGQNFPAQNYIVKEGELAPQREKRTTIMAMKQAATAAIRAFSSSVPSQSSPLVRHLHASAGSKKIVGVFYKANEYAAMNPNFVGCVEGSLGIREWLESQGHQYIVTDDKEGLNCELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHVDLNAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVIKGEWNVAGIAHRAYDLEGKTIGTVGAGRIGKLLLQRLKPFNCNLLYHDRLKIDPELEKQIGAKFEEDMDAMLPKCDVLVINTPLTDKTRGLFNKERIAKCKKGVLIVNNARGAIMDTEAVVDACNSGHIGGYSGDVWNPQPAPKDHPWRYMPNQAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGQDFPAQNYIVKEGELAPQYRMNASHHNVIPSGMDIYGESGDGYVRADQIDLKSLDEQFQRHLSKAWTKEKNKRKDDEEGGGGRRPGITRQEWEIDPSKLIVKAVIARGTFGTVHRGIYDGRDVAVKFLDWGEEGHRSEAEIASLRATFTQEVALWHNKLEHPHVTEGRFYGVISK 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3329868 3339200 - Cp4.1LG03g07520.1 Cpe03g00561 466278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00561 928 Gene3D - 37 380 - -
Cpe03g00561 928 CDD FDH 425 772 IPR033689 GO:0008863
Cpe03g00561 928 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 48 173 - -
Cpe03g00561 928 PANTHER FORMATE DEHYDROGENASE CHLOROPLASTIC/MITOCHONDRIAL 414 772 - -
Cpe03g00561 928 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 250 272 IPR029753 -
Cpe03g00561 928 SUPERFAMILY Protein kinase-like (PK-like) 838 919 IPR011009 -
Cpe03g00561 928 PANTHER FORMATE DEHYDROGENASE 1 414 772 - -
Cpe03g00561 928 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 589 616 IPR029752 -
Cpe03g00561 928 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 279 295 IPR029753 -
Cpe03g00561 928 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 341 IPR036291 -
Cpe03g00561 928 Gene3D Phosphorylase Kinase; domain 1 839 928 - -
Cpe03g00561 928 Hamap Formate dehydrogenase, mitochondrial. 36 386 IPR033689 GO:0008863
Cpe03g00561 928 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 200 227 IPR029752 -
Cpe03g00561 928 Gene3D - 426 769 - -
Cpe03g00561 928 PANTHER FORMATE DEHYDROGENASE 1 25 382 - -
Cpe03g00561 928 PANTHER FORMATE DEHYDROGENASE CHLOROPLASTIC/MITOCHONDRIAL 25 382 - -
Cpe03g00561 928 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 551 729 IPR006140 GO:0051287
Cpe03g00561 928 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 162 340 IPR006140 GO:0051287
Cpe03g00561 928 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 69 366 IPR006139 GO:0016616|GO:0051287
Cpe03g00561 928 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 544 730 IPR036291 -
Cpe03g00561 928 CDD FDH 36 382 IPR033689 GO:0008863
Cpe03g00561 928 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 668 684 IPR029753 -
Cpe03g00561 928 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 458 755 IPR006139 GO:0016616|GO:0051287
Cpe03g00561 928 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 437 562 - -
Cpe03g00561 928 Hamap Formate dehydrogenase, mitochondrial. 425 773 IPR033689 GO:0008863
Cpe03g00561 928 Gene3D - 541 731 - -
Cpe03g00561 928 Gene3D - 152 342 - -
Cpe03g00561 928 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 639 661 IPR029753 -
Cpe03g00561 928 MobiDBLite consensus disorder prediction 818 842 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00561 Cpe-Chr3:3329868 Cpe04g01549 Cpe-Chr4:12135714 3.87E-48 dispersed
Cpe18g00839 Cpe-Chr18:7743553 Cpe03g00561 Cpe-Chr3:3329868 1.68E-53 wgd
Cpe03g00561 Cpe-Chr3:3329868 Cpe04g00554 Cpe-Chr4:5962969 1.04E-58 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00561 K00122 - csv:101213516 732.635