Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe03g00561 | ATGGCGATGAAGCAGGCAGCTAGAGCAGCGATTCGAGCCTTTTCTTCCTCTGTAACCTCTCAGTCGTCACCTCTCGTCAGGCACCTTCATGCTTCTGCAGGGAGCAAGAAGATCGTTGGTGTGTTTTACAAGGCTAATGAGTATGCTGCTATGAACCCTAATTTCGTGGGATGTGTGGAGGGATCCTTGGGCATACGCGAATGGTTGGAATCTCAAGGGCATAAGTATATAGTCACTGATGATAAGGAAGGACTCAATTGTGAGCTTGAAAAGCACATTCCAGATCTCCATGTTCTCATAACAACTCCCTTCCATCCTGCCTACGTAACTGCTGAAAGGATCAAAAAAGCCAAAAACTTGCAGTTGCTTCTCACGGCTGGAATTGGGTCTGATCATGTTGACCTCAATGCTGCAGCTGCTGCTGGGCTAACAGTTGCCGAGGTTACCGGAAGCAATGTGGTTTCAGTTGCAGAGGATGAGCTAATGAGAATTCTCATTCTCGTCAGGAATTTCCTACCAGGACACCACCAGGTTATTAATGGTCAATGGAATGTTGCTGGGATAGCTCACAGAGCTTACGATCTTGAGGGGAAGACAATTGGGACCGTAGGCGCTGGACGAATTGGAAAACTTTTACTTCAAAGGCTGAAACCTTTCAATTGCAATCTCCTCTATCACGACCGACTCAAGATTGACCCTGAACTTGAGAAGCAGATTGGATCAAAGTTTGAGGAGGACATGGATGCAATGCTACCAAAATGCGATGTACTTGTCATCAACACTCCTCTAACTGACAAGACAAGGGGATTATTTAACAAAGAGAGAATTGCCAAATGCAAGAAAGGAGTACTTATTGTTAACAATGCTCGAGGAGCAATTATGGACACTGAAGCGGTCGTTGACGCTTGTAACAGTGGACACATTGGAGGTTACAGTGGTGATGTGTGGAACCCGCAACCAGCTCCAAAAGACCATCCATGGCGTTACATGCCAAACCAAGCCATGACACCTCATATTTCTGGCACCACCATAGATGCACAGTTGCGATACGCTGCCGGAGTGAAGGACATGCTTGATAGGTACTTCAAAGGACAGAACTTTCCTGCTCAAAACTACATCGTCAAGGAAGGAGAACTCGCCCCTCAAAGAGAGAAAAGGACGACGATAATGGCGATGAAGCAGGCAGCTACAGCAGCGATTCGAGCTTTTTCTTCCTCTGTACCTTCTCAGTCATCACCTCTCGTCAGGCACCTTCATGCTTCTGCAGGGAGCAAGAAGATCGTCGGTGTGTTTTACAAGGCTAATGAGTATGCTGCTATGAACCCTAATTTCGTGGGATGTGTGGAGGGATCCTTGGGCATACGCGAATGGTTGGAATCTCAAGGGCATCAGTATATAGTCACTGATGATAAGGAAGGACTCAATTGTGAGCTTGAAAAGCACATTCCAGATCTCCACGTTCTCATAACAACTCCCTTCCATCCTGCCTACGTAACTGCTGAAAGGATAAAAAAAGCCAAAAACTTGGAGTTGCTTCTCACGGCTGGAATTGGGTCTGATCATGTTGACCTCAATGCAGCAGCTGCAGCTGGACTGACAGTTGCCGAGGTTACCGGAAGCAATGTGGTTTCAGTTGCAGAGGATGAGCTAATGAGAATTCTCATTCTCGTCAGGAATTTCCTACCAGGACACCACCAGGTTATTAAAGGTGAATGGAATGTTGCTGGGATAGCTCACAGAGCTTATGATCTTGAGGGGAAGACAATTGGGACCGTAGGTGCTGGACGAATTGGAAAACTTTTACTCCAAAGGCTGAAACCTTTCAACTGCAATCTCCTCTATCACGACCGACTCAAGATTGACCCTGAACTTGAGAAGCAGATTGGAGCAAAGTTTGAGGAGGACATGGATGCAATGCTACCAAAATGCGATGTACTTGTCATCAACACTCCTCTAACTGACAAGACAAGGGGATTATTTAACAAAGAGAGAATTGCCAAATGCAAGAAAGGAGTACTAATTGTTAACAATGCTCGAGGAGCAATTATGGACACTGAAGCGGTCGTTGACGCTTGTAACAGTGGACACATTGGAGGTTACAGTGGTGATGTGTGGAACCCGCAACCAGCTCCAAAAGACCATCCATGGCGTTACATGCCAAACCAAGCCATGACACCTCATATTTCTGGCACCACCATTGATGCACAGTTGCGATATGCTGCGGGAGTGAAGGACATGCTTGATAGGTACTTCAAAGGACAGGACTTTCCTGCTCAAAACTACATCGTCAAGGAAGGAGAACTTGCCCCTCAGTACCGAATGAATGCATCTCATCATAATGTAATTCCATCTGGAATGGATATCTATGGTGAAAGTGGAGATGGGTATGTGAGGGCGGATCAGATAGATCTGAAGAGCTTAGACGAGCAGTTTCAGAGACATTTGAGCAAAGCATGGACCAAGGAGAAGAACAAGAGGAAGGACGACGAGGAAGGCGGCGGCGGAAGAAGGCCGGGAATCACCAGGCAGGAGTGGGAGATTGACCCTTCTAAACTCATCGTCAAAGCCGTCATAGCTCGTGGCACTTTTGGAACTGTTCATCGTGGAATTTATGATGGCCGAGATGTTGCTGTTAAATTTCTTGACTGGGGGGAAGAGGGTCATAGGTCGGAGGCAGAAATCGCTTCTCTTAGAGCAACTTTTACCCAAGAAGTTGCTCTCTGGCACAACAAGCTTGAGCATCCACATGTTACCGAGGGAAGATTCTATGGCGTTATTTCTAAA | 2784 | 46.55 | MAMKQAARAAIRAFSSSVTSQSSPLVRHLHASAGSKKIVGVFYKANEYAAMNPNFVGCVEGSLGIREWLESQGHKYIVTDDKEGLNCELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLQLLLTAGIGSDHVDLNAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVINGQWNVAGIAHRAYDLEGKTIGTVGAGRIGKLLLQRLKPFNCNLLYHDRLKIDPELEKQIGSKFEEDMDAMLPKCDVLVINTPLTDKTRGLFNKERIAKCKKGVLIVNNARGAIMDTEAVVDACNSGHIGGYSGDVWNPQPAPKDHPWRYMPNQAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGQNFPAQNYIVKEGELAPQREKRTTIMAMKQAATAAIRAFSSSVPSQSSPLVRHLHASAGSKKIVGVFYKANEYAAMNPNFVGCVEGSLGIREWLESQGHQYIVTDDKEGLNCELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHVDLNAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVIKGEWNVAGIAHRAYDLEGKTIGTVGAGRIGKLLLQRLKPFNCNLLYHDRLKIDPELEKQIGAKFEEDMDAMLPKCDVLVINTPLTDKTRGLFNKERIAKCKKGVLIVNNARGAIMDTEAVVDACNSGHIGGYSGDVWNPQPAPKDHPWRYMPNQAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGQDFPAQNYIVKEGELAPQYRMNASHHNVIPSGMDIYGESGDGYVRADQIDLKSLDEQFQRHLSKAWTKEKNKRKDDEEGGGGRRPGITRQEWEIDPSKLIVKAVIARGTFGTVHRGIYDGRDVAVKFLDWGEEGHRSEAEIASLRATFTQEVALWHNKLEHPHVTEGRFYGVISK | 928 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 3329868 | 3339200 | - | Cp4.1LG03g07520.1 | Cpe03g00561 | 466278 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe03g00561 | 928 | Gene3D | - | 37 | 380 | - | - | |
Cpe03g00561 | 928 | CDD | FDH | 425 | 772 | IPR033689 | GO:0008863 | |
Cpe03g00561 | 928 | SUPERFAMILY | Formate/glycerate dehydrogenase catalytic domain-like | 48 | 173 | - | - | |
Cpe03g00561 | 928 | PANTHER | FORMATE DEHYDROGENASE CHLOROPLASTIC/MITOCHONDRIAL | 414 | 772 | - | - | |
Cpe03g00561 | 928 | ProSitePatterns | D-isomer specific 2-hydroxyacid dehydrogenases signature 2. | 250 | 272 | IPR029753 | - | |
Cpe03g00561 | 928 | SUPERFAMILY | Protein kinase-like (PK-like) | 838 | 919 | IPR011009 | - | |
Cpe03g00561 | 928 | PANTHER | FORMATE DEHYDROGENASE 1 | 414 | 772 | - | - | |
Cpe03g00561 | 928 | ProSitePatterns | D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. | 589 | 616 | IPR029752 | - | |
Cpe03g00561 | 928 | ProSitePatterns | D-isomer specific 2-hydroxyacid dehydrogenases signature 3. | 279 | 295 | IPR029753 | - | |
Cpe03g00561 | 928 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 155 | 341 | IPR036291 | - | |
Cpe03g00561 | 928 | Gene3D | Phosphorylase Kinase; domain 1 | 839 | 928 | - | - | |
Cpe03g00561 | 928 | Hamap | Formate dehydrogenase, mitochondrial. | 36 | 386 | IPR033689 | GO:0008863 | |
Cpe03g00561 | 928 | ProSitePatterns | D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. | 200 | 227 | IPR029752 | - | |
Cpe03g00561 | 928 | Gene3D | - | 426 | 769 | - | - | |
Cpe03g00561 | 928 | PANTHER | FORMATE DEHYDROGENASE 1 | 25 | 382 | - | - | |
Cpe03g00561 | 928 | PANTHER | FORMATE DEHYDROGENASE CHLOROPLASTIC/MITOCHONDRIAL | 25 | 382 | - | - | |
Cpe03g00561 | 928 | Pfam | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | 551 | 729 | IPR006140 | GO:0051287 | |
Cpe03g00561 | 928 | Pfam | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | 162 | 340 | IPR006140 | GO:0051287 | |
Cpe03g00561 | 928 | Pfam | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain | 69 | 366 | IPR006139 | GO:0016616|GO:0051287 | |
Cpe03g00561 | 928 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 544 | 730 | IPR036291 | - | |
Cpe03g00561 | 928 | CDD | FDH | 36 | 382 | IPR033689 | GO:0008863 | |
Cpe03g00561 | 928 | ProSitePatterns | D-isomer specific 2-hydroxyacid dehydrogenases signature 3. | 668 | 684 | IPR029753 | - | |
Cpe03g00561 | 928 | Pfam | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain | 458 | 755 | IPR006139 | GO:0016616|GO:0051287 | |
Cpe03g00561 | 928 | SUPERFAMILY | Formate/glycerate dehydrogenase catalytic domain-like | 437 | 562 | - | - | |
Cpe03g00561 | 928 | Hamap | Formate dehydrogenase, mitochondrial. | 425 | 773 | IPR033689 | GO:0008863 | |
Cpe03g00561 | 928 | Gene3D | - | 541 | 731 | - | - | |
Cpe03g00561 | 928 | Gene3D | - | 152 | 342 | - | - | |
Cpe03g00561 | 928 | ProSitePatterns | D-isomer specific 2-hydroxyacid dehydrogenases signature 2. | 639 | 661 | IPR029753 | - | |
Cpe03g00561 | 928 | MobiDBLite | consensus disorder prediction | 818 | 842 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g00561 | Cpe-Chr3:3329868 | Cpe04g01549 | Cpe-Chr4:12135714 | 3.87E-48 | dispersed | |
Cpe18g00839 | Cpe-Chr18:7743553 | Cpe03g00561 | Cpe-Chr3:3329868 | 1.68E-53 | wgd | |
Cpe03g00561 | Cpe-Chr3:3329868 | Cpe04g00554 | Cpe-Chr4:5962969 | 1.04E-58 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe03g00561 | K00122 | - | csv:101213516 | 732.635 |