Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00581 ATGGCGGGTCTCGAGGAACTCAAGAGAAAACTTACTCCCTTGTTTGATGCTGAAAAGGGGCTTTCTATGGATTCCCCTGTGGACCCTTCTGATTCATATACGTTTTCAGACAATGGGACTGTTAATTTGCTGAGCCGATCATATGGGGTTTACAATTTTAATGAGCTAGGGTTACAAAAATGTACGTCGTGGCTTGCCGATGATTCGGGGAGTAGCGAAAGGACATATCGATGTGCTTCCCGTGAAATGAGGATATTTGGAGCCATTGGTAGTGGGGCTAGCAGTGTTGTTCAGAGAGCTATCCACATTCCTGCTCATCGAATCATGGCATTGAAGAAGATTAATATCTTTGAAAAGGAGAAAAGGCAGCAGCTTCTTACCGAGATAAGGACACTATGCGAAGCACCCTGTTCCGAGGGCCTTGTGGAGTTTCATGGAGCATTTTATACCCCTGATTCTGGGCAAATTAGCATAGCTTTGGAGTACATGGATGGAGGGTCGTTGGCAGATGTCCTGCGTTTGAAAAAATGTATACCCGAGCCTGTCCTTTCGTCTATGTTTCAGAAACTTCTTCAAGGTCTAAGTTATCTGCATGGAATGAGACATTTGGTTCACAGAGATATAAAGCCAGCCAATTTACTTGTAAATCTTAAGGGTGAAGCAAAAATTACTGATTTTGGCATAAGTGCTGGCTTGGAGAATTCAATGGCAATGTGTGCTACTTTCGTCGGAACTGTCACGTACATGTCACCAGAGCGAATTCGAAACGAGAGCTATTCTTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTCTTTGAGTGTGGTACTGGTGAATTTCCATATTCAGCTACTGAAGGTCTAGTGAACCTCATGTTGCAGATTTTGGATGACCCGTCTCCATCGCCATCAAAACATAAGTTTTCTCCGGAGTTTTGCTCGTTTGTTGATGCTTGCTTGCAGAAAGACGCAGATGCTAGGCCAACAGCGGAGCAGCTGCTTTCACACCCATTTATCAAAAAATATGAGGATGAACAAGTAGACTTGGCAGCTTTTGTACAGAATGTGTTTGATCCAATACAGAGGATGAAGGACTTGGCCGATGCTTTATACCATGAAAGCTCAACTTTAAGTTTCTCAGGGAAGCAATTTTCTGGTCCAAATGATATCTTTGCCAAACTATCAGACATTCGAAGTACATTAGGGGGAGACTGGCCTCTTGAAAAACTAGTTCATGTCGTCGAGAAACTCCAATGCCGAGCTCACGGTCAGGATGGAATTGCCGTAAGGGTGTCTGGATCCTTCATTGTTGGGAACCAGTTCCTCATATGCGGAGACGGTGTACAAGTAGAGGGACTGCCAAATTTTAAGGATCTCTCCATTGACATGGCGAGTAAGAAAATGGGATCCTTCCGTGAGCAGTTCATCATCGAACCGAGTGACCTCATCGGCCGATACTTCATAGCCAAACAAGAGCTTTATATAATTCAATAG 1494 44.18 MAGLEELKRKLTPLFDAEKGLSMDSPVDPSDSYTFSDNGTVNLLSRSYGVYNFNELGLQKCTSWLADDSGSSERTYRCASREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLRLKKCIPEPVLSSMFQKLLQGLSYLHGMRHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKHKFSPEFCSFVDACLQKDADARPTAEQLLSHPFIKKYEDEQVDLAAFVQNVFDPIQRMKDLADALYHESSTLSFSGKQFSGPNDIFAKLSDIRSTLGGDWPLEKLVHVVEKLQCRAHGQDGIAVRVSGSFIVGNQFLICGDGVQVEGLPNFKDLSIDMASKKMGSFREQFIIEPSDLIGRYFIAKQELYIIQ 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3470754 3475123 + Cp4.1LG03g07420.1 Cpe03g00581 466298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00581 497 CDD PKc_MAPKK_plant_like 84 343 - -
Cpe03g00581 497 SUPERFAMILY NTF2-like 351 495 IPR032710 -
Cpe03g00581 497 Gene3D Transferase(Phosphotransferase) domain 1 164 352 - -
Cpe03g00581 497 PANTHER - 2 368 - -
Cpe03g00581 497 SUPERFAMILY Protein kinase-like (PK-like) 85 369 IPR011009 -
Cpe03g00581 497 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 2 368 - -
Cpe03g00581 497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Cpe03g00581 497 ProSiteProfiles Protein kinase domain profile. 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g00581 497 SMART serkin_6 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g00581 497 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Cpe03g00581 497 ProSiteProfiles Nuclear transport factor 2 domain profile. 348 495 IPR018222 -
Cpe03g00581 497 Gene3D - 353 496 - -
Cpe03g00581 497 PANTHER - 369 496 - -
Cpe03g00581 497 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 369 496 - -
Cpe03g00581 497 Pfam Protein kinase domain 87 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g00581 497 Gene3D Phosphorylase Kinase; domain 1 59 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00581 Cpe-Chr3:3470754 Cpe07g01036 Cpe-Chr7:9324987 2.83E-80 dispersed
Cpe03g00581 Cpe-Chr3:3470754 Cpe11g01143 Cpe-Chr11:9470532 1.95E-80 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62277 PF00069 Pkinase 7.20E-60 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00581 K20607 - csv:101217978 943.34