Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00588 ATGTTCTTCCTTTTTTTTTTTTTTTTTTTTCTTNTGGTTATAGTGACTGAATTGCTCACAGGCGGCACATTGCGCAAATGTCTATTGAATTTGAGGCCAATGAGCATGAAACTTGATGTGGCAATTGGGTTTGCGCTTGATATTGCTCGTGCAATGGAGTGTTTACACTCACATGGAATTATTCACCGTGACCTTAAACCAGGTACAGTGATTTACTATGCTCTTTGGACTCTGCTCTATAGCACAGTCACTTTAAAACATGGAGATAAAAAGCATTATAATCATAAAGTTGATGTATACAGCTTTGCCATTGTCTTGTGGGAGCTCATCCTTAACAGGTTGCCTTTCGAAGGCATGTCGAATTTACAGGCGGCGTATGCAGCAGCTTTTAAGAACATGAGGCCTAGTGCTGAAAACCTTCCAGAGGACTTAGCTTTATTAGTGACATCATGTTGGAGTGAGGATCCAAATACAAGGCCAAACTTTAGCCAGATTATACAGATGCTATTGCAGTCCCTTGCTAGAATATCACCTCGAGAACCCGTAATCCCGCCTCGGATATGTGTTTCTGAAAATGTCGTGATGCCACCTGAATCTCCCGGTACAGATTCCTTGATGGCTGTCCGACATGGCTCAGGGGAAGCCTCACACGGCATGATAGAAGAAACCCCTAAAAGCTCCTTCTTCTGCTTTAACAAGTGTTACTGA 708 42.37 MFFLFFFFFFLXVIVTELLTGGTLRKCLLNLRPMSMKLDVAIGFALDIARAMECLHSHGIIHRDLKPGTVIYYALWTLLYSTVTLKHGDKKHYNHKVDVYSFAIVLWELILNRLPFEGMSNLQAAYAAAFKNMRPSAENLPEDLALLVTSCWSEDPNTRPNFSQIIQMLLQSLARISPREPVIPPRICVSENVVMPPESPGTDSLMAVRHGSGEASHGMIEETPKSSFFCFNKCY 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3541980 3544670 + Cp4.1LG03g07320.1 Cpe03g00588 466305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00588 235 PANTHER PROTEIN KINASE ATN1 79 212 - -
Cpe03g00588 235 Pfam Protein tyrosine and serine/threonine kinase 90 169 IPR001245 GO:0004672|GO:0006468
Cpe03g00588 235 Pfam Protein tyrosine and serine/threonine kinase 13 66 IPR001245 GO:0004672|GO:0006468
Cpe03g00588 235 ProSiteProfiles Protein kinase domain profile. 1 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g00588 235 PANTHER SERINE-THREONINE PROTEIN KINASE 79 212 - -
Cpe03g00588 235 PANTHER SERINE-THREONINE PROTEIN KINASE 12 72 - -
Cpe03g00588 235 SUPERFAMILY Protein kinase-like (PK-like) 13 196 IPR011009 -
Cpe03g00588 235 Gene3D Transferase(Phosphotransferase) domain 1 10 174 - -
Cpe03g00588 235 PANTHER PROTEIN KINASE ATN1 12 72 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g02327 Cpe03g00588 CCT
Cpe01g02327 Cpe03g00588 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00588 Cpe-Chr3:3541980 Cpe08g01255 Cpe-Chr8:9088537 1.74E-65 dispersed
Cpe01g02327 Cpe-Chr1:19575002 Cpe03g00588 Cpe-Chr3:3541980 9.11E-69 wgd
Cpe18g00870 Cpe-Chr18:7964351 Cpe03g00588 Cpe-Chr3:3541980 7.39E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62279 PF07714 PK_Tyr_Ser-Thr 4.90E-15 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00588 - - csv:101219563 386.341