Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00604 ATGGGAAGGCGATCCTTATGGGTTGCGCTTCTCGTCCTCTCCCTTCTTCTTTATTCGCGGCCGCACGGAGTTTCTTCCACTCTTCCTCTTCAATCATTGAATCAGTATCTAATGCCATTCGTGGATAAAAAGCGATACAAGATTTCTACTAAGTGTAGGCTTCACCCCGATAATGACATGTTCAGAGATCAAGAACAGCACAAGAGCCATCTAGATTTTAATGACTGGAAGTGTGGATATTGTAAAAAGAAATTCTACGAAGAAAAGTATCTCGATCAGCACTTTGCCAATAGACACTATGATTTACTCAATGTGAGTCGAAGCAAGTGCTTGGCAGATTTTTGTGGTGCATTGCACTGTGACCGTGTGATAGATACAATATCACAGAAAAGTAAATGCAATCCTGCTGCTGCTGCAAGAAATAAACACATGTGTGAGGGTCTTGCTGACAGTTGTTTTCCTATCGATGACGGTGCCTCGGCCAGCCATCTTCACGAATTCTTCTTACGTCAGTTCTGTGATGCACACACATGTAGCGGAAAGCCAAAACCTTTCTCGAGAGGTCGACAAGTTAGGACGAGTGTGTTCTACGTTGTTATTTCAGTTTTGACAGTCATTTTTGTGCTGTTTTTCTATGTCTTCATTTACTTGTATAAGAGGGGAATGAGAACTCGACCACAGGTGCTGAAACGCCTCTCAAAAAGTGGAGGAAAGAAAAAACCTTCATAG 729 42.39 MGRRSLWVALLVLSLLLYSRPHGVSSTLPLQSLNQYLMPFVDKKRYKISTKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYCKKKFYEEKYLDQHFANRHYDLLNVSRSKCLADFCGALHCDRVIDTISQKSKCNPAAAARNKHMCEGLADSCFPIDDGASASHLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSVFYVVISVLTVIFVLFFYVFIYLYKRGMRTRPQVLKRLSKSGGKKKPS 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3625746 3629054 + Cp4.1LG03g07200.1 Cpe03g00604 466321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00604 242 PANTHER ZINC FINGER PROTEIN-RELATED 33 242 - -
Cpe03g00604 242 ProSitePatterns Zinc finger C2H2 type domain signature. 78 99 IPR013087 -
Cpe03g00604 242 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 33 242 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00884 Cpe-Chr18:8015177 Cpe03g00604 Cpe-Chr3:3625746 4.70E-100 wgd
Cpe03g00604 Cpe-Chr3:3625746 Cpe04g00511 Cpe-Chr4:5639999 3.11E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49190 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00604 - - csv:101219582 392.119