Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00630 ATGGATTGGGGTTGGGGAACTCTTTCTGGAAAACCCACTTTCCGGGAAAAGAATCACACCCCCCCACCGCCCACAAGTTTCTCTGACTCGATTGGTTCTTCCAATAATAATGAAGAACCCATTCTCGAGGGTTCGAGCCAGGAAAGTTCTTCCTCTAATGGATCCTCCAAAAGGACTCGAATCCTCCAAGGGACTCAAAATCAGTCCTGTTTGGTCGATGGTTGTGACTCTGACCTGAAGAATTGCAAGGAGTATCATCGACGCCATAGGGTCTGCGATTCGCACTCCAAAACCCCTGTTGTGATGGTGAGGGGCGAGGAAAAACGATTCTGTCAACAGTGCAGCAGGTTCCATCCGCTTGGTGAGTTCGATGAGGTGAAGCGAAGCTGTAGGAAGCGGCTTGATGGGCACAATCGCCGCAGGAGGAAGCCTCAACCCGAATCCCTGTTTATGAGTTCAAGAGATTTCCTGTCAAACTGCAAAGGGCCAATTGTGCTGCAGTTCAGTAATCAACAGATTCATGTGCCTGATGAACATGGTAGGAGTTTATGGTCCATGAGGCCTGAAGAAACCTCCATGGTTCCACCAAATTCCTCTGCTTACTTCAGCTATGGAGGAGGAGGAGGAGACAACGAAGAGTTGCCCTTTTTCCTCCACAAAAATGGGACCAGGCAAGGTAAGCAAATGGTGTCTTCTCGGTTATGTTTCAATCAGCAACTTCCTGATGCAATCTCTCAGGGAAGTGAGGTGGGCAGCCAGAAACAAGCGGTGCCTACCAATATTTCGCCCGTGGATTCAGGTTGTGCTCTCTATCTTCTGTCATCGCACCCAGATGCTGGGTTGAGCTCTTTAGTTCAGTCTCATCTGAGTCTTCCAGTCCAAACTCCAGAGACTGAGCTGCATTTCAGTAGTTTAAGTGACTTCTCTGCCTCCTTTGGCTCCAAGGACAAGCCTGTTTGTGAAACCAATCTTGATAATGGGTTGGAGCTTGAAATGGAGGCATCTGATGGCTTGTTCCAAAGTGAGGCTCCTCATAAGTTTCCCATTTCTTGGGAGTAG 1059 48.63 MDWGWGTLSGKPTFREKNHTPPPPTSFSDSIGSSNNNEEPILEGSSQESSSSNGSSKRTRILQGTQNQSCLVDGCDSDLKNCKEYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCKGPIVLQFSNQQIHVPDEHGRSLWSMRPEETSMVPPNSSAYFSYGGGGGDNEELPFFLHKNGTRQGKQMVSSRLCFNQQLPDAISQGSEVGSQKQAVPTNISPVDSGCALYLLSSHPDAGLSSLVQSHLSLPVQTPETELHFSSLSDFSASFGSKDKPVCETNLDNGLELEMEASDGLFQSEAPHKFPISWE 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3756159 3757896 - Cp4.1LG03g06900.1 Cpe03g00630 466347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00630 352 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 46 352 - -
Cpe03g00630 352 ProSiteProfiles Zinc finger SBP-type profile. 67 144 IPR004333 GO:0003677
Cpe03g00630 352 Gene3D - 61 131 IPR036893 GO:0003677|GO:0005634
Cpe03g00630 352 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 46 352 IPR044817 GO:0003677
Cpe03g00630 352 SUPERFAMILY SBT domain 69 149 IPR036893 GO:0003677|GO:0005634
Cpe03g00630 352 Pfam SBP domain 70 143 IPR004333 GO:0003677
Cpe03g00630 352 MobiDBLite consensus disorder prediction 1 61 - -
Cpe03g00630 352 MobiDBLite consensus disorder prediction 20 61 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00630 Cpe-Chr3:3756159 Cpe17g01068 Cpe-Chr17:8083301 2.59E-47 dispersed
Cpe18g00914 Cpe-Chr18:8150876 Cpe03g00630 Cpe-Chr3:3756159 1.19E-40 wgd
Cpe03g00630 Cpe-Chr3:3756159 Cpe04g01623 Cpe-Chr4:12582134 5.65E-41 wgd
Cpe03g00630 Cpe-Chr3:3756159 Cpe04g00482 Cpe-Chr4:5477767 1.89E-156 wgd
Cpe03g00630 Cpe-Chr3:3756159 Cpe09g00953 Cpe-Chr9:8542517 6.09E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49193 PF03110 SBP 9.00E-31 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00630 - - cmos:111442201 700.279