Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00630 ATGGATTGGGGTTGGGGAACTCTTTCTGGAAAACCCACTTTCCGGGAAAAGAATCACACCCCCCCACCGCCCACAAGTTTCTCTGACTCGATTGGTTCTTCCAATAATAATGAAGAACCCATTCTCGAGGGTTCGAGCCAGGAAAGTTCTTCCTCTAATGGATCCTCCAAAAGGACTCGAATCCTCCAAGGGACTCAAAATCAGTCCTGTTTGGTCGATGGTTGTGACTCTGACCTGAAGAATTGCAAGGAGTATCATCGACGCCATAGGGTCTGCGATTCGCACTCCAAAACCCCTGTTGTGATGGTGAGGGGCGAGGAAAAACGATTCTGTCAACAGTGCAGCAGGTTCCATCCGCTTGGTGAGTTCGATGAGGTGAAGCGAAGCTGTAGGAAGCGGCTTGATGGGCACAATCGCCGCAGGAGGAAGCCTCAACCCGAATCCCTGTTTATGAGTTCAAGAGATTTCCTGTCAAACTGCAAAGGGCCAATTGTGCTGCAGTTCAGTAATCAACAGATTCATGTGCCTGATGAACATGGTAGGAGTTTATGGTCCATGAGGCCTGAAGAAACCTCCATGGTTCCACCAAATTCCTCTGCTTACTTCAGCTATGGAGGAGGAGGAGGAGACAACGAAGAGTTGCCCTTTTTCCTCCACAAAAATGGGACCAGGCAAGGTAAGCAAATGGTGTCTTCTCGGTTATGTTTCAATCAGCAACTTCCTGATGCAATCTCTCAGGGAAGTGAGGTGGGCAGCCAGAAACAAGCGGTGCCTACCAATATTTCGCCCGTGGATTCAGGTTGTGCTCTCTATCTTCTGTCATCGCACCCAGATGCTGGGTTGAGCTCTTTAGTTCAGTCTCATCTGAGTCTTCCAGTCCAAACTCCAGAGACTGAGCTGCATTTCAGTAGTTTAAGTGACTTCTCTGCCTCCTTTGGCTCCAAGGACAAGCCTGTTTGTGAAACCAATCTTGATAATGGGTTGGAGCTTGAAATGGAGGCATCTGATGGCTTGTTCCAAAGTGAGGCTCCTCATAAGTTTCCCATTTCTTGGGAGTAG 1059 48.63 MDWGWGTLSGKPTFREKNHTPPPPTSFSDSIGSSNNNEEPILEGSSQESSSSNGSSKRTRILQGTQNQSCLVDGCDSDLKNCKEYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCKGPIVLQFSNQQIHVPDEHGRSLWSMRPEETSMVPPNSSAYFSYGGGGGDNEELPFFLHKNGTRQGKQMVSSRLCFNQQLPDAISQGSEVGSQKQAVPTNISPVDSGCALYLLSSHPDAGLSSLVQSHLSLPVQTPETELHFSSLSDFSASFGSKDKPVCETNLDNGLELEMEASDGLFQSEAPHKFPISWE 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3756159 3757896 - Cp4.1LG03g06900.1 Cpe03g00630 466347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00630 352 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 46 352 - -
Cpe03g00630 352 ProSiteProfiles Zinc finger SBP-type profile. 67 144 IPR004333 GO:0003677
Cpe03g00630 352 Gene3D - 61 131 IPR036893 GO:0003677|GO:0005634
Cpe03g00630 352 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 46 352 IPR044817 GO:0003677
Cpe03g00630 352 SUPERFAMILY SBT domain 69 149 IPR036893 GO:0003677|GO:0005634
Cpe03g00630 352 Pfam SBP domain 70 143 IPR004333 GO:0003677
Cpe03g00630 352 MobiDBLite consensus disorder prediction 1 61 - -
Cpe03g00630 352 MobiDBLite consensus disorder prediction 20 61 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00630 - - - cmos:111442201 700.279
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00630 Cpe-Chr3:3756159 Cpe17g01068 Cpe-Chr17:8083301 2.59E-47 dispersed
Cpe18g00914 Cpe-Chr18:8150876 Cpe03g00630 Cpe-Chr3:3756159 1.19E-40 wgd
Cpe03g00630 Cpe-Chr3:3756159 Cpe04g01623 Cpe-Chr4:12582134 5.65E-41 wgd
Cpe03g00630 Cpe-Chr3:3756159 Cpe04g00482 Cpe-Chr4:5477767 1.89E-156 wgd
Cpe03g00630 Cpe-Chr3:3756159 Cpe09g00953 Cpe-Chr9:8542517 6.09E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1148 . . . . . . . . Cmo14g00739 Cmo11g01608 Cma11g01513 Cma14g00725 Car11g01303 Car14g00662 . Cpe03g00630 . . . . . . . . . . . . . . . Cone11ag0042 Cone18ag1438 . . . . Chy06g01539 Cme06g01786 . . Bda07g01385 . Bpe09g00547 Bpe11g01487 . . . . . . . . . . . Bhi01g02096 . . . Hepe02g1698 . . Cla05g01423 Cam05g1511 Cec05g1523 Cco05g1559 Clacu05g1518 Cmu05g1426 Cre05g1528 . Csa03g02486 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe03g00825 CCT 181 1002 SBP-box Gene Family AT2G47070 55.9 1.5e-240 829.7
Cpe02g01546 CCT 179 1038 SBP-box Gene Family AT2G47070 51.1 3.7e-220 761.9
Cpe03g00825 CCT 25 1002 SBP-box Gene Family AT3G60030 54.5 2.7e-276 948.7
Cpe02g01546 CCT 25 1038 SBP-box Gene Family AT3G60030 51.7 1.1e-258 890.2
Cpe04g01623 . 1 196 SBP-box Gene Family AT5G50570 50.7 1.4e-44 177.6
Cpe01g00972 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.4e-39 161.0
Cpe17g01068 . 29 165 SBP-box Gene Family AT5G50570 58.3 7.7e-38 155.2
Cpe04g00482 . 63 166 SBP-box Gene Family AT5G50570 67.3 1.3e-37 154.5
Cpe03g00630 . 55 169 SBP-box Gene Family AT5G50570 64.1 3.8e-37 152.9
Cpe03g00825 CCT 181 1002 SBP-box Gene Family AT2G47070 55.9 1.5e-240 829.7
Cpe02g01546 CCT 179 1038 SBP-box Gene Family AT2G47070 51.1 3.7e-220 761.9
Cpe03g00825 CCT 25 1002 SBP-box Gene Family AT3G60030 54.5 2.7e-276 948.7
Cpe02g01546 CCT 25 1038 SBP-box Gene Family AT3G60030 51.7 1.1e-258 890.2
Cpe04g01623 . 1 196 SBP-box Gene Family AT5G50570 50.7 1.4e-44 177.6
Cpe01g00972 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.4e-39 161.0
Cpe17g01068 . 29 165 SBP-box Gene Family AT5G50570 58.3 7.7e-38 155.2
Cpe04g00482 . 63 166 SBP-box Gene Family AT5G50570 67.3 1.3e-37 154.5
Cpe03g00630 . 55 169 SBP-box Gene Family AT5G50570 64.1 3.8e-37 152.9
Cpe04g01623 . 1 196 SBP-box Gene Family AT5G50670 50.7 1.4e-44 177.6
Cpe01g00972 . 15 163 SBP-box Gene Family AT5G50670 54.6 1.4e-39 161.0
Cpe17g01068 . 29 165 SBP-box Gene Family AT5G50670 58.3 7.7e-38 155.2
Cpe04g00482 . 63 166 SBP-box Gene Family AT5G50670 67.3 1.3e-37 154.5
Cpe03g00630 . 55 169 SBP-box Gene Family AT5G50670 64.1 3.8e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006434 2 1 0 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 3 1 1 2 1 0 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49193 PF03110 SBP 9.00E-31 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g00630 Cpe_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0