Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00631 ATGGAGAATTATCAGATGTTCTTCCCTTGCTCCAACGGCGGCGGACTGTCGGCTTTTAGTCAACCCGACATCTCATCCGGCACCGCCTCTGACATGTTCCGGAATTTTCACGGCGGCGATCCGCAAGCAAGTGGGGTTTTGGGGCTTAAGACAGAGGTGGTTACGGCGGCGGTGGAAGCCGACGGGAACTGTGGCGGCAGCGGAAATAAGAAAGGGGAGAAGAAGGTGAGGAAACCCAGATATGCTTTTCAGACGAGGAGTCAAGTTGACATTCTTGACGATGGATATCGTTGGAGAAAATATGGTCAAAAAGCAGTAAAAAACAACAAGTTTCCTAGGAGCTATTATCGGTGCACGCATCAAGGGTGCAATGTGAAGAAGCAAGTGCAAAGACTAACAAGAGACGAAGGGGTGGTGGTAACGACGTATGAAGGCATGCATACACACTCCATTGATAAACCAACCGACAACTTTGAACAAATCTTGAGTAGAATGCAGATTTACAGTACTCCTTTTTGA 519 47.98 MENYQMFFPCSNGGGLSAFSQPDISSGTASDMFRNFHGGDPQASGVLGLKTEVVTAAVEADGNCGGSGNKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTRDEGVVVTTYEGMHTHSIDKPTDNFEQILSRMQIYSTPF 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3760638 3762359 - Cp4.1LG03g06840.1 Cpe03g00631 466348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00631 172 ProSiteProfiles WRKY domain profile. 87 152 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe03g00631 172 Pfam WRKY DNA -binding domain 93 149 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe03g00631 172 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 167 IPR044810 GO:0003700
Cpe03g00631 172 PANTHER WRKY TRANSCRIPTION FACTOR 75-RELATED 1 167 - -
Cpe03g00631 172 SMART WRKY_cls 92 151 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe03g00631 172 Gene3D WRKY domain 70 152 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe03g00631 172 SUPERFAMILY WRKY DNA-binding domain 84 151 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00631 Cpe-Chr3:3760638 Cpe03g01223 Cpe-Chr3:9956281 3.18E-57 dispersed
Cpe08g00072 Cpe-Chr8:462927 Cpe03g00631 Cpe-Chr3:3760638 1.15E-19 dispersed
Cpe01g00649 Cpe-Chr1:3759854 Cpe03g00631 Cpe-Chr3:3760638 1.02E-38 transposed
Cpe03g00631 Cpe-Chr3:3760638 Cpe04g00481 Cpe-Chr4:5469872 5.64E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49194 PF03106 WRKY 3.40E-26 CL0274 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00631 - - csv:101219349 283.493