Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00658 ATGCTACCGAAATCCACCGGAATCCTTTGGCTTGACGGCGACCATCACGACGGCGCTTCTTGGAATAGAACCAACAACCACAACAACGATGACATCGCTGTTGCTGGCTCCGCTTCCTCCTTCAAATCCATGCTCCAATCGGACTGGTACATGAACTCTACTACTCCTTTGAATCCTTCCAACCAAGATTTTCATTCCCTCTCTTCGCACCCCGATGTTCGAGACCTTCCTTTCAACTCCAATCCGCCGGATAACTTGCTCTTACGCCCCATAGATTCTTCCTCTGCCTGTTCTGCATCACAGGCTTTTGCTATGGATCCTTCCCATTCCCAATCGATGTTGCCTCCTCAGAAATCCTGTTTCCCTTCTCTTTTTAACGTTGCTTGTAGCAGTAATTTTGAAAACGGCTTCGATTTGGGCGGTGAGAATGGCCTGCTTGGTTCTTACCAGGGGAACCAAGTTTCGAATTCCTCAGGTATGATGGGATTCAACGGCATTTCTTCTCTTCCTCAAATCGGTAATCAGGAACTAAGCTTAAACAACGCGGAGTTTCCGGTCGCTGATAACCCTCCGGCATTCGGCGCTGGATTTAATCCGACGGATGCCTTCGAGAGCTTCGATGGTTGCGGGAATGCTCTGTTTCAGAATAGGTCAAAGGCTTTGAGACCTCCTGAATCGTTCCCTCAGGTCGGCGGCACACAGCCGACGCTGTTCCAGAAGCGGGCGGCGCATCGAGTTGGCTCTTCCGGAGTTGATAAACTAGAGAATTTGGAGGTTTCGGGTTCTAAATTTGGAGACGGCTCAATGTGGATGCCGAATATGGAGAGGCTGATGAAGAACAGCGACGAGGACATTGAGGACGACAGCCTGGATATTTCTCGCTTGAATTACGATTCCGATGAAGCCAATGAGTATAATAAGCTAGAGGACAATGTTAATGCTAAAAACTCCGGAAGCAATTCCAATGCCAACACCACTGTAACTGACGGAAACCAGAAGGGGAAGAGGAAGGGGATGCCGGCGAAAAATCTCATGGCGGAGCGACGGCGGAGAAAGAAGCTGAATGATAGACTCTACATGCTTAGGTCCGTCGTACCCAAAATCAGCAAGATGGATAGAGCTTCAATCCTTGGAGATGCCATTGATTACCTGAAGGAGCTTCTTCAAAAGATAAATGAACTCCATAATGAACTTGAGTCGACTCCTCCTCCTCCTGGTTCTTCGTTGCAGCCTCCTGCAAGCATTCACCCTTTGACGCCGACGCTGCCGATACCGACGCTGCCGAATCTTCCCTGTCGTGTCAAAGAAGAGCTGTGTCCAAGCTCCATGTCAAGCCCCAAAGCTCAGCCTGCCAGGGTTGAAGTCCGAGCCAGAGAAGGTAGAGCTGTCAATATTCACATGTTTTGTTCTCGCAAGCCAGGTCTCTTGCTATCAACCATGAAGGCTCTGGACAACCTTGGCTTGGACATCCAACAAGCTGTGATAAGCTGTTTCAATGGATTTGCTTTAGACGTGTTTCGCGCCGAGCAATCCAAGGAAGGCGAGGAGATCTCACCCGAGCAAATTAAAGCAGTGCTGTTGGATTCAGCTGGTTTACATGGTGTTGCTTAA 1611 49.22 MLPKSTGILWLDGDHHDGASWNRTNNHNNDDIAVAGSASSFKSMLQSDWYMNSTTPLNPSNQDFHSLSSHPDVRDLPFNSNPPDNLLLRPIDSSSACSASQAFAMDPSHSQSMLPPQKSCFPSLFNVACSSNFENGFDLGGENGLLGSYQGNQVSNSSGMMGFNGISSLPQIGNQELSLNNAEFPVADNPPAFGAGFNPTDAFESFDGCGNALFQNRSKALRPPESFPQVGGTQPTLFQKRAAHRVGSSGVDKLENLEVSGSKFGDGSMWMPNMERLMKNSDEDIEDDSLDISRLNYDSDEANEYNKLEDNVNAKNSGSNSNANTTVTDGNQKGKRKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQKINELHNELESTPPPPGSSLQPPASIHPLTPTLPIPTLPNLPCRVKEELCPSSMSSPKAQPARVEVRAREGRAVNIHMFCSRKPGLLLSTMKALDNLGLDIQQAVISCFNGFALDVFRAEQSKEGEEISPEQIKAVLLDSAGLHGVA 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3925974 3929094 + Cp4.1LG03g06610.1 Cpe03g00658 466375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00658 536 Coils Coil 377 401 - -
Cpe03g00658 536 MobiDBLite consensus disorder prediction 309 339 - -
Cpe03g00658 536 Pfam Helix-loop-helix DNA-binding domain 345 387 IPR011598 GO:0046983
Cpe03g00658 536 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 95 535 - -
Cpe03g00658 536 Gene3D - 329 401 IPR036638 GO:0046983
Cpe03g00658 536 MobiDBLite consensus disorder prediction 309 332 - -
Cpe03g00658 536 CDD bHLH_AtAMS_like 341 403 - -
Cpe03g00658 536 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 408 IPR036638 GO:0046983
Cpe03g00658 536 SMART finulus 344 393 IPR011598 GO:0046983
Cpe03g00658 536 CDD ACT_UUR-ACR-like 465 525 - -
Cpe03g00658 536 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 387 IPR011598 GO:0046983
Cpe03g00658 536 ProSiteProfiles ACT domain profile. 464 536 IPR002912 -
Cpe03g00658 536 MobiDBLite consensus disorder prediction 60 85 - -
Cpe03g00658 536 PANTHER BHLH TRANSCRIPTIONAL FACTOR 95 535 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00658 Cpe-Chr3:3925974 Cpe07g00150 Cpe-Chr7:849756 1.21E-36 dispersed
Cpe04g00600 Cpe-Chr4:6299847 Cpe03g00658 Cpe-Chr3:3925974 1.43E-26 dispersed
Cpe09g00942 Cpe-Chr9:8431363 Cpe03g00658 Cpe-Chr3:3925974 5.62E-157 transposed
Cpe12g00066 Cpe-Chr12:390882 Cpe03g00658 Cpe-Chr3:3925974 6.74E-13 transposed
Cpe03g00658 Cpe-Chr3:3925974 Cpe04g00453 Cpe-Chr4:5257417 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49197 PF00010 HLH 2.20E-09 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00658 - - bhj:120082707 796.193