Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00701 ATGCGGATGAGTTGTAATGGTTGCAGAGTTCTTCGCAAAGGTTGCAGTGAAAATTGCAGTATTCGACCTTGTTTGCACTGGATCAAGAGTCCTGATTCTCAAGCCAACGCTACTGTTTTCCTCGCCAAGTTCTATGGCCGTGCTGGACTCATGAACCTTATCAACGCTGGTCCTGATCATCTCCGTCCTGCAATTTTTAGATCTCTTCTCTATGAGGCTTGTGGCCGTATTGTGAATCCGATTTACGGATCGGTTGGATTGTTGTGGTCTGGTAGTTGGCAACTCTGTCAGGCGGCTGTTGAGGCCGTTCTTAAAGGTGCTCCGATCACGCCGATTAACTCTGAGGCGGCGGCTACTGGTGATGGACCGCCGTTGAAAGCCTACGATATTCGTCACGTTTCTAAGGATGAAAACTCCGCTGCATCTATCGACGGCGGAGTCAATCGGCGAGTCAAGACTCGGTGCCGGTTCAAGCGGTCTGCGGTGAAGACGAAAGCGTGTAAAGGAATCTCATCCACCGTGGATGAGTCGACTCGACGACTGTGTTCCATCGAGTTGAACCGATCGTCAAGCGGCGAGTCGTCGTTGAGTCACCAATCCGACTCTCCACATGTTGAAAACGAGAGCAAAGAAACCGATAGCATGATTTCAGTATCGACGGCGGAGTTCTCTCCTCCTCCAGTACTGCCAGTTTTATTCCGATCAGAATCCACTTCCGTACAAAAACGTCCAGGTCACGGCGGCGGCACTGTGCCAATTCCGCAAAGCGAATTAGCTCTAGAACTAACTCTGGGGATGAAGCCGGTGTCACGTGCCGAGCACGTGATTCCAATGAAGAAGCGGAAGATTGAGACCGACGTTGGGTTGAGGCCCAATAACAACGAGGCGTGCAATACTGTATTGGGCCTTGATTTTGCAGCCTAA 924 50.87 MRMSCNGCRVLRKGCSENCSIRPCLHWIKSPDSQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATGDGPPLKAYDIRHVSKDENSAASIDGGVNRRVKTRCRFKRSAVKTKACKGISSTVDESTRRLCSIELNRSSSGESSLSHQSDSPHVENESKETDSMISVSTAEFSPPPVLPVLFRSESTSVQKRPGHGGGTVPIPQSELALELTLGMKPVSRAEHVIPMKKRKIETDVGLRPNNNEACNTVLGLDFAA 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4248445 4250029 - Cp4.1LG03g06080.1 Cpe03g00701 466418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00701 307 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 304 - -
Cpe03g00701 307 PIRSF AS2 1 301 IPR017414 -
Cpe03g00701 307 MobiDBLite consensus disorder prediction 186 202 - -
Cpe03g00701 307 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Cpe03g00701 307 MobiDBLite consensus disorder prediction 186 213 - -
Cpe03g00701 307 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Cpe03g00701 307 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 304 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g01431 Cpe03g00701 CCT
Cpe02g01431 Cpe03g00701 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00701 Cpe-Chr3:4248445 Cpe04g01407 Cpe-Chr4:11336629 8.10E-87 dispersed
Cpe02g01431 Cpe-Chr2:12418418 Cpe03g00701 Cpe-Chr3:4248445 4.22E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49201 PF03195 LOB 2.60E-24 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00701 - - csv:101208245 509.605