Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00717 ATGTGGCAAAAATCCAAAAAAATGGTGTTCCCCAATGGATTCCTACGAGGGATTTTAGCGGCGGCGCTTCTGGGTTTGCCCTTTTTGGGTTCTGTTCTTGCGGATCTGGCTTCCGACAGGGCGGCGCTGGTGGGTTTCCGGGCGGCGATGGGTGGTCGGCCCCGATTAGAGTGGAATATCTCCGAGGTGTCTCCCTGTTCTTGGGCTGGTGTTAGCTGTGGTAAGAATGGGGTTTTTGAGCTCCGGCTTCCGGCTATGGGGCTTTCCGGTGAACTTCCGGTGGGGCTTGGGAATTTGACGCAGTTACAAACTCTGTCTCTGCGGTTTAATGCTCTGTCTGGACGGATTCCGGCGGATTTTGCGAATCTTCGTGGGCTGAGGAATCTTTACTTGCAGGGGAATTTGTTTTCCGGCGAGATTCCAGCGTTTCTGTTCGATTTGAAGAATCTGGTTCGGTTGAACATGGCGGACAACAAATTTTCAGGTGAGATTTCATCTGGGTTCAACAATTTGTCCCGTTTGGCTACTCTGTATTTACAGAACAATCAGTTCACCGGAGTGGTTCCTGAGTTAAATCTTCATCTTGAACAATTTAATGTCTCGTTTAATCGTTTGAACGGTTCGATTCCGTCGAAGCTCTCTGGTTTTCCGGCGAGTGTTTTTGAGGGAAATTTGCTCTGTGGGGCGCCATTGTTGCTCTGCAACTCGACGGAGACGACGGAGCCAGGTCGAAAGTCGAAGCTCTCGGGTGGGACGATTGCCGGAATTGTGATAGGTGGTTTGTTTGTTTTGGTATTGATTTTGGTTGTTTTGATTCTTGTGTGTCAAAGAAAGAGGAAGGGGAAATTGGAGTCGAATGAGGGGGTTCGGTCGGCCGGTGAGGTTGAGGCGCCGGGGGAGAAGGCGGCGACGGTGGAAGGGAGTAGCGAAAGTATAAACATAGATCATTTAATGGCACCGAAATCGGTAGGGAAGGGCGGCGAGAGAGATAAGAGATTGGTGTTCTTTGGGAATGTGGGGAATGTGTTTGATTTGGAGGATTTGTTGAGGGCGTCTGCGGAGGTTCTCGGGAAGGGGACGTTCGGGACGGCGTATAAGGCGACGCTCGAGACGGGGATGGTGGTTGCTGTGAAGCGGTTGAAGGAGATGACGTCGGCAGAGAAGGAGTTCAAGGAGAAGATCGAGGAGGTGGGGAGGATGAAGCATGAGAATTTGGTCCCTCTCCGAGCTTATTATTATAGTAGAGAGGAAAAGCTTTTAGTTTATGATTACATGCCGATGGGAAGCTTATCTGCACTTCTACACGGTAGTAGTAGAGAGTCGGGAAGAACTCCGTTGAATTGGGAAGCAAGATGTGGCATAGCGCTCGGAGTAAGCCAGGGGATTCATTACCTTCATTCTCAAGGTCCAACCATCTCTCACGGCAACATCAAGTCCTCAAACCTTCTCCTCACCCAATCATACGAAGCACGCGTATCTGACTTCGGCCTCGCACAGCTAGCCATGTACCAAAATGTCGAGGAGGAGATGGTTCAACTCTTGGAACTCGCTCTGCAATGCACCGTCCCATATCCCGACAACCGTCCAGAGATGGACGAGATCGTTCGACGAATCGAAGAACTCTGTCGATCGTCCTCACAAAAACAGAACGATGAAAGTAATGGTATTTCTACACCGTCAAAAGAATAA 1689 49.97 MWQKSKKMVFPNGFLRGILAAALLGLPFLGSVLADLASDRAALVGFRAAMGGRPRLEWNISEVSPCSWAGVSCGKNGVFELRLPAMGLSGELPVGLGNLTQLQTLSLRFNALSGRIPADFANLRGLRNLYLQGNLFSGEIPAFLFDLKNLVRLNMADNKFSGEISSGFNNLSRLATLYLQNNQFTGVVPELNLHLEQFNVSFNRLNGSIPSKLSGFPASVFEGNLLCGAPLLLCNSTETTEPGRKSKLSGGTIAGIVIGGLFVLVLILVVLILVCQRKRKGKLESNEGVRSAGEVEAPGEKAATVEGSSESINIDHLMAPKSVGKGGERDKRLVFFGNVGNVFDLEDLLRASAEVLGKGTFGTAYKATLETGMVVAVKRLKEMTSAEKEFKEKIEEVGRMKHENLVPLRAYYYSREEKLLVYDYMPMGSLSALLHGSSRESGRTPLNWEARCGIALGVSQGIHYLHSQGPTISHGNIKSSNLLLTQSYEARVSDFGLAQLAMYQNVEEEMVQLLELALQCTVPYPDNRPEMDEIVRRIEELCRSSSQKQNDESNGISTPSKE 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4356939 4358977 - Cp4.1LG03g06000.1 Cpe03g00717 466434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00717 562 Gene3D Ribonuclease Inhibitor 36 228 IPR032675 -
Cpe03g00717 562 Pfam Protein kinase domain 353 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g00717 562 PANTHER OS05G0588300 PROTEIN 500 542 - -
Cpe03g00717 562 PANTHER OS05G0588300 PROTEIN 32 501 - -
Cpe03g00717 562 SUPERFAMILY L domain-like 57 216 - -
Cpe03g00717 562 SMART LRR_typ_2 171 194 IPR003591 -
Cpe03g00717 562 SMART LRR_typ_2 123 147 IPR003591 -
Cpe03g00717 562 SMART LRR_typ_2 99 122 IPR003591 -
Cpe03g00717 562 Pfam Leucine rich repeat N-terminal domain 37 73 IPR013210 -
Cpe03g00717 562 PANTHER LRR RECEPTOR-LIKE KINASE 500 542 - -
Cpe03g00717 562 PANTHER LRR RECEPTOR-LIKE KINASE 32 501 - -
Cpe03g00717 562 ProSiteProfiles Protein kinase domain profile. 350 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g00717 562 MobiDBLite consensus disorder prediction 547 562 - -
Cpe03g00717 562 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524
Cpe03g00717 562 SUPERFAMILY Protein kinase-like (PK-like) 354 538 IPR011009 -
Cpe03g00717 562 MobiDBLite consensus disorder prediction 542 562 - -
Cpe03g00717 562 Gene3D Phosphorylase Kinase; domain 1 328 424 - -
Cpe03g00717 562 Gene3D Transferase(Phosphotransferase) domain 1 425 510 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00717 Cpe-Chr3:4356939 Cpe09g01107 Cpe-Chr9:9549259 1.75E-165 dispersed
Cpe03g00717 Cpe-Chr3:4356939 Cpe01g01976 Cpe-Chr1:16908045 3.56E-173 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62280 PF00069 Pkinase 2.30E-24 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00717 - - csv:101221942 805.823