Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00825 ATGGAGGCTGGATATGGAGGCGAAGCTTGTCAATTGTATGGTATGAGTAGCATGGACTTGAGGGCTGCTGTTGGTAAGCGGAGTTTGGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTTATTGCTACACCATTAAACACTGTGGAATCTGATCATTTGAACAGGCAGCTATTTCCAATTGTCTCTGGGATTCCCTTGACAACAGGGGGCTCTTCGAACAGTTCTTCGTCTTGCTCTGATGAAGCTAATATGGGGATTGAGAAAGGGAAAAGGGAAGTGGAGAAACGGAGGAGGATTAGTGGTATAGAAGATGAGAATCTTAATGATGAAGCGCGTAGTTTGAGTTTGAAGATTGGTGGAAATGTTTCTCAGATGGTTGAGAGAGATGCTGGGAGTTGGGAAGGGAGTAGTGGGAAGAAGAGTAAGTTGGGTGGGGGAGCTTCAAATCGTGCTGTTTGTCAAGTAGAAGATTGTGGAGCTGATCTGAGCAATGCAAAAGAGTATCATAGACGACATAAAGTTTGTGAAACGCATTCTAAGGCGAGTAATGCGCTTGTTGCTAATGTTATGCAGCGATTCTGTCAACAATGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGGAAAAGAAGTTGCCGCAGGCGTTTGGCTGGCCACAATAAGCGCAGAAGAAAAATTAACCCGGATACTGTTGTGAATGGAAACTCTCCACCTGATGAGCAGACTAGTAGTTATTTATTGTTGACTCTATTGCGAATACTTGCTAACTTACACTCCAATGGATCAAATCAGACCACAGATCAGGATCTTCTTTCTCATCTTATACGAACCCTTTCCTGCCAATCTAGTGAACATGGGGGAAAGAACCTAACTGGGATTCTGCATGAACCACAGAAATTACTGAACAATGGGGCATTAATTGGTAAATCAGATCTAGTTTCTACTTTTCTCTCAAACGGTCCACCAGTACCGTTGAGGTCGTCGAAACAACACGACACGATACCTATATCTGAGGCACCAGTACAAGCCATTGGTAGGGATGGAGATACACCAGCTGTATCTTGTATTAAACCAAGCACTTCAAACAGCCCTCCTGCATATTCAGAAATCAGGGACAGTCAAGTTGGGCAATGCAAAATGATGAACTTTGATCTAAATGATGCTTATGTTGACTCAGACGATGGCATGGAAGACATTGAGAGACAAGCACTCCCAGTGCACATGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAAGACTCTCATCAGTCAAGCCCCCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCTCAGTCACCTTCTAGCTCTGCTGGAGAAGCTCAGAGCCGCACAGATCGCATCATTTTGAAACTATTTGGGAAAGCACCAAATGATTTTCCTCACGTTTTGCGAGCTCAGGTTCTAGATTGGTTATCACACAGTCCTACAGAGATTGAGAGCTATATCAGACCTGGTTGTGTTGTTCTAACCGTATACACACGACAGACCGAGGCTGCTTGGGACGATCTTTGTCATGACCTCAGTACCAGTTTTAATAGCCTTCTCGATGTTTCGGACGACGCTTTCTGGAGAACTGGATGGGTTTACGTTCGGGTTCAGCATCAAATAGCTTTCGTTTATCAAGGTCGGGTCGTGGTTGACACATCCTTGCCTCTTAGAAACAAGAATTACTGTAGAATCACAAGTGTGAACCCAGTGGCTGTTTCTACATCTAAGAAGGCTATATTTTCAGTTAAAGGAAGAAACTTGACACAACCTACAACTAGGTTACTCTGTGCAATTGAAGGGAAATATCTGACTCAGGAAGCTTCTGATGAGCCAACCGAACGTGACGATAACTCGAACGCGCTAGATGACAGTCGATGCGTTACCTTTTCCTGCTCTATTCCTGTCGTCTATGGAAGGGGATTCATTGAGGTTGAAGATGATGGATTTAGCAGCAGCTTCTTTCCTTTTATAGTTGCAGAGGAGGATGTTTGTTCTGAGATTTGCACACTTCAGAGTGCATTAGAATTGACCGAAACATGTTCGAATTCCGGGGAAACGGAAGAACTGGAAGGAAGGAGTAATGCAATGGAGTTCATTCATGAAATTGGTTGGCTGTTTCATAGGAATCAATTGAAGTCTAGATTAGGTGACTTGGATCCTAATGAAAATCTCTTTTCACTGCCACGGTTCAAGTGGCTCATGGAGTTCTCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAGCTGTTGGATGTTCTTCTTGATGGGACCGTGGATGCTGGAGATCACTCATCCTTGAATCTTGCATTGATGGATATGAGTCTACTTCACCGAGCGGTGAGAAAAAACAGTAGATCACTGGTGGAGCTCCTTTTGGTATATCCCTCAAAAGTGAAGGATACATCAAGTGCTGATAGCTTCCTGTTTAGACCGAATGTCGTAGGCCCGGCCGGGTTGACCCCTCTTCACATTGCAGCTGGTAAAGACGACTCCGAGGACGTTCTCGATGCATTAACTAACGACCCCAGAATGGTGGGAGTTGAGGCTTGGAAGAGCGCTCGAGACAGCACGGGGTCAACACCGGAGGATTACGCGCGTTTACGTGGGCATTACTCGTATATTCGGCTTGTGCAGAGGAAAATAAACAAGAGATCTGCAGCAGCTGAGCATGTAGTGGTGGAGATTCCTCCTAGTAGTGTATCAGATGGTAGGTGGAATGAGAAGCAGAACACTGATATGAGCTCATCCAGGTTTGAGATTGGTAGGACAGAAGTAAAACATTGCAGGCAGTGTGTGAGAAAACCGGTGCGTTGTGGAACATCATCGAGCGCGTCTCTGGTGTACAGACCGGCGATGCTTTCGATGGTGGCGATTGCTGCTGTGTGTGTGTGTGTGGCACTCCTATTCAAAAGCTCGCCCGAGGTTCTGTACGTGTTCCGACCGTTCCGATGGGAACTGTTAGATTATGGTACTAGTTAG 3009 45.13 MEAGYGGEACQLYGMSSMDLRAAVGKRSLEWDLNDWKWDGDLFIATPLNTVESDHLNRQLFPIVSGIPLTTGGSSNSSSSCSDEANMGIEKGKREVEKRRRISGIEDENLNDEARSLSLKIGGNVSQMVERDAGSWEGSSGKKSKLGGGASNRAVCQVEDCGADLSNAKEYHRRHKVCETHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDTVVNGNSPPDEQTSSYLLLTLLRILANLHSNGSNQTTDQDLLSHLIRTLSCQSSEHGGKNLTGILHEPQKLLNNGALIGKSDLVSTFLSNGPPVPLRSSKQHDTIPISEAPVQAIGRDGDTPAVSCIKPSTSNSPPAYSEIRDSQVGQCKMMNFDLNDAYVDSDDGMEDIERQALPVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVVLTVYTRQTEAAWDDLCHDLSTSFNSLLDVSDDAFWRTGWVYVRVQHQIAFVYQGRVVVDTSLPLRNKNYCRITSVNPVAVSTSKKAIFSVKGRNLTQPTTRLLCAIEGKYLTQEASDEPTERDDNSNALDDSRCVTFSCSIPVVYGRGFIEVEDDGFSSSFFPFIVAEEDVCSEICTLQSALELTETCSNSGETEELEGRSNAMEFIHEIGWLFHRNQLKSRLGDLDPNENLFSLPRFKWLMEFSMDHDWCAVVKKLLDVLLDGTVDAGDHSSLNLALMDMSLLHRAVRKNSRSLVELLLVYPSKVKDTSSADSFLFRPNVVGPAGLTPLHIAAGKDDSEDVLDALTNDPRMVGVEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSAAAEHVVVEIPPSSVSDGRWNEKQNTDMSSSRFEIGRTEVKHCRQCVRKPVRCGTSSSASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGTS 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5142997 5150017 - Cp4.1LG03g04920.1 Cpe03g00825 466542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00825 1002 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1001 IPR044817 GO:0003677
Cpe03g00825 1002 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677
Cpe03g00825 1002 Gene3D - 752 905 IPR036770 -
Cpe03g00825 1002 SUPERFAMILY Ankyrin repeat 768 886 IPR036770 -
Cpe03g00825 1002 SUPERFAMILY SBT domain 154 236 IPR036893 GO:0003677|GO:0005634
Cpe03g00825 1002 MobiDBLite consensus disorder prediction 420 455 - -
Cpe03g00825 1002 Pfam SBP domain 156 229 IPR004333 GO:0003677
Cpe03g00825 1002 Gene3D - 147 217 IPR036893 GO:0003677|GO:0005634
Cpe03g00825 1002 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 1001 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g01546 Cpe03g00825 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00825 Cpe-Chr3:5142997 Cpe09g00953 Cpe-Chr9:8542517 4.02E-33 dispersed
Cpe19g01027 Cpe-Chr19:7133221 Cpe03g00825 Cpe-Chr3:5142997 1.12E-07 dispersed
Cpe02g00006 Cpe-Chr2:41059 Cpe03g00825 Cpe-Chr3:5142997 1.20E-35 transposed
Cpe17g00395 Cpe-Chr17:2897648 Cpe03g00825 Cpe-Chr3:5142997 1.43E-34 transposed
Cpe02g01546 Cpe-Chr2:13114807 Cpe03g00825 Cpe-Chr3:5142997 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49212 PF03110 SBP 8.70E-30 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00825 - - csv:101203103 1759.58