Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00825 ATGGAGGCTGGATATGGAGGCGAAGCTTGTCAATTGTATGGTATGAGTAGCATGGACTTGAGGGCTGCTGTTGGTAAGCGGAGTTTGGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTTATTGCTACACCATTAAACACTGTGGAATCTGATCATTTGAACAGGCAGCTATTTCCAATTGTCTCTGGGATTCCCTTGACAACAGGGGGCTCTTCGAACAGTTCTTCGTCTTGCTCTGATGAAGCTAATATGGGGATTGAGAAAGGGAAAAGGGAAGTGGAGAAACGGAGGAGGATTAGTGGTATAGAAGATGAGAATCTTAATGATGAAGCGCGTAGTTTGAGTTTGAAGATTGGTGGAAATGTTTCTCAGATGGTTGAGAGAGATGCTGGGAGTTGGGAAGGGAGTAGTGGGAAGAAGAGTAAGTTGGGTGGGGGAGCTTCAAATCGTGCTGTTTGTCAAGTAGAAGATTGTGGAGCTGATCTGAGCAATGCAAAAGAGTATCATAGACGACATAAAGTTTGTGAAACGCATTCTAAGGCGAGTAATGCGCTTGTTGCTAATGTTATGCAGCGATTCTGTCAACAATGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGGAAAAGAAGTTGCCGCAGGCGTTTGGCTGGCCACAATAAGCGCAGAAGAAAAATTAACCCGGATACTGTTGTGAATGGAAACTCTCCACCTGATGAGCAGACTAGTAGTTATTTATTGTTGACTCTATTGCGAATACTTGCTAACTTACACTCCAATGGATCAAATCAGACCACAGATCAGGATCTTCTTTCTCATCTTATACGAACCCTTTCCTGCCAATCTAGTGAACATGGGGGAAAGAACCTAACTGGGATTCTGCATGAACCACAGAAATTACTGAACAATGGGGCATTAATTGGTAAATCAGATCTAGTTTCTACTTTTCTCTCAAACGGTCCACCAGTACCGTTGAGGTCGTCGAAACAACACGACACGATACCTATATCTGAGGCACCAGTACAAGCCATTGGTAGGGATGGAGATACACCAGCTGTATCTTGTATTAAACCAAGCACTTCAAACAGCCCTCCTGCATATTCAGAAATCAGGGACAGTCAAGTTGGGCAATGCAAAATGATGAACTTTGATCTAAATGATGCTTATGTTGACTCAGACGATGGCATGGAAGACATTGAGAGACAAGCACTCCCAGTGCACATGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAAGACTCTCATCAGTCAAGCCCCCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCTCAGTCACCTTCTAGCTCTGCTGGAGAAGCTCAGAGCCGCACAGATCGCATCATTTTGAAACTATTTGGGAAAGCACCAAATGATTTTCCTCACGTTTTGCGAGCTCAGGTTCTAGATTGGTTATCACACAGTCCTACAGAGATTGAGAGCTATATCAGACCTGGTTGTGTTGTTCTAACCGTATACACACGACAGACCGAGGCTGCTTGGGACGATCTTTGTCATGACCTCAGTACCAGTTTTAATAGCCTTCTCGATGTTTCGGACGACGCTTTCTGGAGAACTGGATGGGTTTACGTTCGGGTTCAGCATCAAATAGCTTTCGTTTATCAAGGTCGGGTCGTGGTTGACACATCCTTGCCTCTTAGAAACAAGAATTACTGTAGAATCACAAGTGTGAACCCAGTGGCTGTTTCTACATCTAAGAAGGCTATATTTTCAGTTAAAGGAAGAAACTTGACACAACCTACAACTAGGTTACTCTGTGCAATTGAAGGGAAATATCTGACTCAGGAAGCTTCTGATGAGCCAACCGAACGTGACGATAACTCGAACGCGCTAGATGACAGTCGATGCGTTACCTTTTCCTGCTCTATTCCTGTCGTCTATGGAAGGGGATTCATTGAGGTTGAAGATGATGGATTTAGCAGCAGCTTCTTTCCTTTTATAGTTGCAGAGGAGGATGTTTGTTCTGAGATTTGCACACTTCAGAGTGCATTAGAATTGACCGAAACATGTTCGAATTCCGGGGAAACGGAAGAACTGGAAGGAAGGAGTAATGCAATGGAGTTCATTCATGAAATTGGTTGGCTGTTTCATAGGAATCAATTGAAGTCTAGATTAGGTGACTTGGATCCTAATGAAAATCTCTTTTCACTGCCACGGTTCAAGTGGCTCATGGAGTTCTCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAGCTGTTGGATGTTCTTCTTGATGGGACCGTGGATGCTGGAGATCACTCATCCTTGAATCTTGCATTGATGGATATGAGTCTACTTCACCGAGCGGTGAGAAAAAACAGTAGATCACTGGTGGAGCTCCTTTTGGTATATCCCTCAAAAGTGAAGGATACATCAAGTGCTGATAGCTTCCTGTTTAGACCGAATGTCGTAGGCCCGGCCGGGTTGACCCCTCTTCACATTGCAGCTGGTAAAGACGACTCCGAGGACGTTCTCGATGCATTAACTAACGACCCCAGAATGGTGGGAGTTGAGGCTTGGAAGAGCGCTCGAGACAGCACGGGGTCAACACCGGAGGATTACGCGCGTTTACGTGGGCATTACTCGTATATTCGGCTTGTGCAGAGGAAAATAAACAAGAGATCTGCAGCAGCTGAGCATGTAGTGGTGGAGATTCCTCCTAGTAGTGTATCAGATGGTAGGTGGAATGAGAAGCAGAACACTGATATGAGCTCATCCAGGTTTGAGATTGGTAGGACAGAAGTAAAACATTGCAGGCAGTGTGTGAGAAAACCGGTGCGTTGTGGAACATCATCGAGCGCGTCTCTGGTGTACAGACCGGCGATGCTTTCGATGGTGGCGATTGCTGCTGTGTGTGTGTGTGTGGCACTCCTATTCAAAAGCTCGCCCGAGGTTCTGTACGTGTTCCGACCGTTCCGATGGGAACTGTTAGATTATGGTACTAGTTAG 3009 45.13 MEAGYGGEACQLYGMSSMDLRAAVGKRSLEWDLNDWKWDGDLFIATPLNTVESDHLNRQLFPIVSGIPLTTGGSSNSSSSCSDEANMGIEKGKREVEKRRRISGIEDENLNDEARSLSLKIGGNVSQMVERDAGSWEGSSGKKSKLGGGASNRAVCQVEDCGADLSNAKEYHRRHKVCETHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDTVVNGNSPPDEQTSSYLLLTLLRILANLHSNGSNQTTDQDLLSHLIRTLSCQSSEHGGKNLTGILHEPQKLLNNGALIGKSDLVSTFLSNGPPVPLRSSKQHDTIPISEAPVQAIGRDGDTPAVSCIKPSTSNSPPAYSEIRDSQVGQCKMMNFDLNDAYVDSDDGMEDIERQALPVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVVLTVYTRQTEAAWDDLCHDLSTSFNSLLDVSDDAFWRTGWVYVRVQHQIAFVYQGRVVVDTSLPLRNKNYCRITSVNPVAVSTSKKAIFSVKGRNLTQPTTRLLCAIEGKYLTQEASDEPTERDDNSNALDDSRCVTFSCSIPVVYGRGFIEVEDDGFSSSFFPFIVAEEDVCSEICTLQSALELTETCSNSGETEELEGRSNAMEFIHEIGWLFHRNQLKSRLGDLDPNENLFSLPRFKWLMEFSMDHDWCAVVKKLLDVLLDGTVDAGDHSSLNLALMDMSLLHRAVRKNSRSLVELLLVYPSKVKDTSSADSFLFRPNVVGPAGLTPLHIAAGKDDSEDVLDALTNDPRMVGVEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSAAAEHVVVEIPPSSVSDGRWNEKQNTDMSSSRFEIGRTEVKHCRQCVRKPVRCGTSSSASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGTS 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5142997 5150017 - Cp4.1LG03g04920.1 Cpe03g00825 466542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00825 1002 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1001 IPR044817 GO:0003677
Cpe03g00825 1002 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677
Cpe03g00825 1002 Gene3D - 752 905 IPR036770 -
Cpe03g00825 1002 SUPERFAMILY Ankyrin repeat 768 886 IPR036770 -
Cpe03g00825 1002 SUPERFAMILY SBT domain 154 236 IPR036893 GO:0003677|GO:0005634
Cpe03g00825 1002 MobiDBLite consensus disorder prediction 420 455 - -
Cpe03g00825 1002 Pfam SBP domain 156 229 IPR004333 GO:0003677
Cpe03g00825 1002 Gene3D - 147 217 IPR036893 GO:0003677|GO:0005634
Cpe03g00825 1002 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 1001 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00825 - - - csv:101203103 1759.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g01546 Cpe03g00825 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00825 Cpe-Chr3:5142997 Cpe09g00953 Cpe-Chr9:8542517 4.02E-33 dispersed
Cpe19g01027 Cpe-Chr19:7133221 Cpe03g00825 Cpe-Chr3:5142997 1.12E-07 dispersed
Cpe02g00006 Cpe-Chr2:41059 Cpe03g00825 Cpe-Chr3:5142997 1.20E-35 transposed
Cpe17g00395 Cpe-Chr17:2897648 Cpe03g00825 Cpe-Chr3:5142997 1.43E-34 transposed
Cpe02g01546 Cpe-Chr2:13114807 Cpe03g00825 Cpe-Chr3:5142997 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g464 . . . . Bpe03g00509 . Bma13g00108 . . . Cma01g00262 Cma14g00958 Car01g00236 Car14g00872 . . Cpe03g00825 . . . . . . . . . . . . . . Cone17ag0385 Cone20ag1033 . Cone11ag0721 . . Chy04g01191 . Blo07g00617 Blo10g00099 Bda05g00421 . . Bpe11g00121 . . . Cmo01g00273 Cmo14g00981 . . . . Cpe02g01546 . . . . . . . . Cla10g01123 Cam10g1498 Cec10g1187 Cco10g1169 Clacu10g1180 Cmu10g1953 Cre10g1335 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe03g00825 CCT 181 1002 SBP-box Gene Family AT2G47070 55.9 1.5e-240 829.7
Cpe02g01546 CCT 179 1038 SBP-box Gene Family AT2G47070 51.1 3.7e-220 761.9
Cpe03g00825 CCT 25 1002 SBP-box Gene Family AT3G60030 54.5 2.7e-276 948.7
Cpe02g01546 CCT 25 1038 SBP-box Gene Family AT3G60030 51.7 1.1e-258 890.2
Cpe04g01623 . 1 196 SBP-box Gene Family AT5G50570 50.7 1.4e-44 177.6
Cpe01g00972 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.4e-39 161.0
Cpe17g01068 . 29 165 SBP-box Gene Family AT5G50570 58.3 7.7e-38 155.2
Cpe04g00482 . 63 166 SBP-box Gene Family AT5G50570 67.3 1.3e-37 154.5
Cpe03g00630 . 55 169 SBP-box Gene Family AT5G50570 64.1 3.8e-37 152.9
Cpe03g00825 CCT 181 1002 SBP-box Gene Family AT2G47070 55.9 1.5e-240 829.7
Cpe02g01546 CCT 179 1038 SBP-box Gene Family AT2G47070 51.1 3.7e-220 761.9
Cpe03g00825 CCT 25 1002 SBP-box Gene Family AT3G60030 54.5 2.7e-276 948.7
Cpe02g01546 CCT 25 1038 SBP-box Gene Family AT3G60030 51.7 1.1e-258 890.2
Cpe04g01623 . 1 196 SBP-box Gene Family AT5G50570 50.7 1.4e-44 177.6
Cpe01g00972 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.4e-39 161.0
Cpe17g01068 . 29 165 SBP-box Gene Family AT5G50570 58.3 7.7e-38 155.2
Cpe04g00482 . 63 166 SBP-box Gene Family AT5G50570 67.3 1.3e-37 154.5
Cpe03g00630 . 55 169 SBP-box Gene Family AT5G50570 64.1 3.8e-37 152.9
Cpe04g01623 . 1 196 SBP-box Gene Family AT5G50670 50.7 1.4e-44 177.6
Cpe01g00972 . 15 163 SBP-box Gene Family AT5G50670 54.6 1.4e-39 161.0
Cpe17g01068 . 29 165 SBP-box Gene Family AT5G50670 58.3 7.7e-38 155.2
Cpe04g00482 . 63 166 SBP-box Gene Family AT5G50670 67.3 1.3e-37 154.5
Cpe03g00630 . 55 169 SBP-box Gene Family AT5G50670 64.1 3.8e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49212 PF03110 SBP 8.70E-30 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g00825 Cpe_Chr03 FPKM 3.616144 3.115091 2.192682 2.267426 5.251028 6.151653 4.721368 0.983664 1.091889 1.665744