Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00830 ATGTCTCGCCAAGTTCCTACTACTGCGTTCCATAAGTCCAAGACGCTTGATAATAAATATATGCTGGGAGATGAGATCGGAAAAGGAGCATATGGGCGAGTCTACAAGGGTCTGGATTTGGAGAATGGGGACTTTGTTGCTATTAAACAAGTTTCCTTGGAGAATATTGCTCAAGAGGACCTCAACATTATCATGAATTTGAACCACAAAAACATTGTGAAGTATCTTGGATCTCTAAAAACAAAGACTCACCTTCACATAATACTCGAGTATGTGGAGAATGGATCACTTGCCAACATTATCAAGCCAAATAAGTTTGGACCATTTCCAGAATCATTGGTCGCTGTTTATATTTCTCAGGGTCTCGTGAAACTTGCTGATTTTGGTGTTGCGACAAAATTAACAGAGGCTGATGTTAATACTCATTCAGTTGTTGGAACACCTTACTGGATGGCTCCTGAGGTTATTGAAATGTCAGGAGTTTGTGCTGCTTCTGACATATGGAGTGTTGGATGTACTGTGATCGAACTACTTACATGTGTACCTCCATATTATGATCTACAACCTATGCCAGCTCTGTTTCGCATCGTACAGAAGATTGTCATTGGCTCAGTTGGTTTTAAACAGTTTGCTCATTTACAATCTTTCTCTTCTTTATGCCTCGTCAAAGTCAACTTTTTGGAGAATTTGATTGCGGACTTGAGGAATGGTGGTAGGTATGGACCAGTTATCAATGAAAATTTTGTTTCATGTTTAAAAAATAAACAACACCAGACTCTAGGTGGACAATTGCTTGACAAGCATCCTCCAATTCCGGATAGCTTATCACCAGATATCACAGATTTCTTACGCCAGTGCTTTAAGAAGGCATGTGATAACCATAAAGAGTGTCCTCTACTGTCAATAAACAAAGCTAAAAGAACGTACTTAAGACCTCAGGATGCCAGGCAAAGGCCCGATGCAAAAACTTTGCTTTCTCATCCTTGGATTCAGAACTGTCGACGGGCCTTGCATTCTTCTCTTCGTCATAGTGGCACATTAAGGAAGGAGTTGTCGTCAGATGTTGTCACTGATATGAGCAAGTCCCAAAAAATTTTTGCTTCAGGGCCTAATTCTGTTGAGGAAGCAGAAAGTCTGGAAGATGACAACCTATTGGATCAAGTTCCCACCTTATCCATTCATGAAAATTCATCTCTTCTAACTGGTTCTGGCAGAATTGCTACCTCTGAGCCAATTGAGTTTCATGAATCTCATGGTAGAGCCCGTGATGAAGTGATAATGAATGGTGATGTGCCATCAACAGAACTAAGGGAAGACGCTGCTAGACAACATGGAGAGAAAGAAACTTCAACAACATCTGGAAATAGTTCATTTGGTTTTGAACCTGAAAGTCAGGACAATAGTTTTCAAAAGGTGTCAAAGATGTCAATTGCTTTGGGAGGAAATGAGCTGAGTAAATTTAGTGACACTCCGGGAGATGCTTCCTTAGATGATTTATTTCAACCTTTAGATAAGCTCCCTGGGGATCAAGCTGCTGAAGCATCAACATCTCTATCTACCCTACAATCAAACATGGGTTATCTGTCAGTAAATGATGTTGTAAAAAATGACCTGGCCACAAAATTGAGGGCTACAATTGCTCAAAAGCAAATGGAAAATGAAATGGGACAGGCAAGCAGTGGGGGTGACCTGCTTCGACTAGTGATGGGTGTTTTAAAGGATGATGATATTGATATTGATGGTTTGGTTTTTGATGAGAAGTTATCCGGAGAAAACCTTTTTCCCTTGCAGGCTGTTGAATTTGGCAGATTAGCTGGGTCATTGAGACCTGATGAACCCGAAGATGTAATTGTATCTGCCTGTCAAAAACTGATTGCTATCTTTCATCAAAGGCCTGAGCAGAAAATTGTTTATATTACACAGCATGGTCTACTCCCATTAACAGAGCTGCTTGAAGTTCCTAAAACTCGTATTATATGTTCAGTGCTCCAGCTTATAAATCAGATTGTTAAGGATAACGTTGACTTCCAGGAGAATGCATGTCTTGTTGGTCTAATTCCTCTGGTAATGGGCTTTGCGGTTCCTGATCGTCCCCGAGAGGTTCGTATGGAAGCAGCTTATTTCTTTCAGCAGCTTTGTCAATCAAGCTCTTTGACATTGCAAATGTTCGTTGCTTGCCGTGGAATACCTGTATTAGTAAGCTTTCTAGAGGCTGACTATGCAAAGTACAGGGACATGGTTCACCTAGCTATTGATGGGATGTGGCAGATCTTTAAACTGCAGCGTTCCACTCTTAGAAATGGTTTCTGTCGTATAGCTGCCAAAAGTGGAATCCTGCTTAGGCTCATTAACACCCTCTACAGCTTGAACGAGGCAACTCGCTTAGCTTCCATAACAGTCGGAGCAGGATATCCGGTTGATGGTTTACCTCAACGACCACGATCAGGTCAACTAGACCCTACCCACCCTATATTCAGTCAGTACGAGGCCTCATTTCCTGTGCCTGATCAGCCTGATCTTTTGAAGGTCAGGCATGGAATAGTTGATCATCACCTGTCTACTGGAACACCAGAACCTTCTAGGGCTTCAACTTCACATTCTCAAAGATCAGATGCCAATCAATCTGATCACCGACAGTTTTTCACAGATGCTGATAGGCCTCAATCTAGCAATACCACAAATGAAGCCTTGGGATCTAAACCGTCAGAGCTAGCATCTTTGGATAAAGTTGTAAATTTAGCAACCAAGGAACCTTATGCCTCTGCTTCTAAAGAACATGAAAATGTAGATAGATGGAGACCTGAGAGGATGGCCAACTCTAACAGGACTTCCACAGATAGGCCTCCAAAATTGCTGGAACCTGTAGCTAATGGATTTCCTACAGCATTGGCAGGTACCCAGCAAGAGCAAGTTCGGCCGCTTCTAAGTCTGTTGGACAAAGAACCCCCGTCTCGACATTTTTCTGGTCAGCTCGAGTACATGCGCCACCTTTCTGGATTGGAAAGGCATGAAACTATAATGCCTCTATTGCATGCATCAAATGAAAAGAAGATAAATGGGGAGCCTGATTTCCTAATGGCAGAATTCGCTGCTGGAGAGTATCTTTCAAAGGACCTTATTGTGATTCTTTTCATCCCAGATGTTTCTCAACGTGGAAAAGACAATGGAAACCTTGACCCCACTTCTAAGGTTTCTCTTAAAGCGGTGGCCAAGAAGGTAGGACCCCAGGTTTCCAATGAAGGAGCTGCATCCACATCTGGAATTGCTTCACAGACAGCATCTGGGGTACTTTCAGGTTCGGGTGTATTAAATGCTAGACCAGGGAGTGCAACATCTTCTGGACTTCTTTCGCACATGGTTTCAACTTTGAATGCTGATGTAGCAAGGGAATACCTGGCGAAGGTAGCTGATCTTTTGCTTGAGTTCGCTCAGGCAGATACAACTGTTAAGTCATATATGTGCAGCCAAAGCTTGCTTAATCGCCTTTTCCAAATGTTCAATAGGGTAGAGCCCCCAATTCTCTTGAAGATATTGAAGTGTATAAATCATCTATCAACAGATCCAAACTGCTTAGAAAATCTTCAGCGAGCAGATGCAATTAAATATTTGATTCCGAACCTCGAACTCAAAGAAGGGTCTCTGGTGTCGCAAATACATACCGAGGTCCTCAGTGCACTATTCAATTTGTGTAAGATCAATAAGAGGAGACAAGAATATGCAGCTGAAAATGGAATTATTCCACATTTGATGCATTTTATTATATCAGACTCTCCTCTGAAACAATATGCATTGCCTCTACTGTGTGATATGGCCCATGCATCGCGTAATTCTAGGGAGCAGTTAAGAGCCCACGGTGGTCTAGATGTGTATTTGAGCCTGCTTGAGGATGAGCTTTGGTCTGTCACGGCATTGGATTCTATTGCTGTTTGCTTGGCTCATGACAACGACAACCGAAAAGTTGAACAAGCTTTGCTGAAGAAGGATGCTGTCCAGAAATTGGTGAAGTTTTTCCAGTGTTGTCCAGAACAACATTTTGTGCATATATTGGAGCCTTTCTTGAAAATCATCACAAAATCTTCCCGAATCAATACGACTTTGGCTGTCAACGGATTGACCCCATTGCTTATAGCAAGGCTGGACCATCAAGACGCGATTGCTCGGCTTAATCTACTCAAACTGATAAAGGCTGTGTATGAGCATCATCCACGACCCAAGCAATTGATTGTGGAGAATGATTTACCTCATAAACTTCAGAATTTGATTGAGGAACGCAGGGATGGACAACGGTCTGGTGGGCAGGTGTTGGTGAAGCAAATGGCCACATCTTTGCTTAAAGCTCTTCATATAAATACCGTCTTGTAA 4362 42.23 MSRQVPTTAFHKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMNLNHKNIVKYLGSLKTKTHLHIILEYVENGSLANIIKPNKFGPFPESLVAVYISQGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQKIVIGSVGFKQFAHLQSFSSLCLVKVNFLENLIADLRNGGRYGPVINENFVSCLKNKQHQTLGGQLLDKHPPIPDSLSPDITDFLRQCFKKACDNHKECPLLSINKAKRTYLRPQDARQRPDAKTLLSHPWIQNCRRALHSSLRHSGTLRKELSSDVVTDMSKSQKIFASGPNSVEEAESLEDDNLLDQVPTLSIHENSSLLTGSGRIATSEPIEFHESHGRARDEVIMNGDVPSTELREDAARQHGEKETSTTSGNSSFGFEPESQDNSFQKVSKMSIALGGNELSKFSDTPGDASLDDLFQPLDKLPGDQAAEASTSLSTLQSNMGYLSVNDVVKNDLATKLRATIAQKQMENEMGQASSGGDLLRLVMGVLKDDDIDIDGLVFDEKLSGENLFPLQAVEFGRLAGSLRPDEPEDVIVSACQKLIAIFHQRPEQKIVYITQHGLLPLTELLEVPKTRIICSVLQLINQIVKDNVDFQENACLVGLIPLVMGFAVPDRPREVRMEAAYFFQQLCQSSSLTLQMFVACRGIPVLVSFLEADYAKYRDMVHLAIDGMWQIFKLQRSTLRNGFCRIAAKSGILLRLINTLYSLNEATRLASITVGAGYPVDGLPQRPRSGQLDPTHPIFSQYEASFPVPDQPDLLKVRHGIVDHHLSTGTPEPSRASTSHSQRSDANQSDHRQFFTDADRPQSSNTTNEALGSKPSELASLDKVVNLATKEPYASASKEHENVDRWRPERMANSNRTSTDRPPKLLEPVANGFPTALAGTQQEQVRPLLSLLDKEPPSRHFSGQLEYMRHLSGLERHETIMPLLHASNEKKINGEPDFLMAEFAAGEYLSKDLIVILFIPDVSQRGKDNGNLDPTSKVSLKAVAKKVGPQVSNEGAASTSGIASQTASGVLSGSGVLNARPGSATSSGLLSHMVSTLNADVAREYLAKVADLLLEFAQADTTVKSYMCSQSLLNRLFQMFNRVEPPILLKILKCINHLSTDPNCLENLQRADAIKYLIPNLELKEGSLVSQIHTEVLSALFNLCKINKRRQEYAAENGIIPHLMHFIISDSPLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLSLLEDELWSVTALDSIAVCLAHDNDNRKVEQALLKKDAVQKLVKFFQCCPEQHFVHILEPFLKIITKSSRINTTLAVNGLTPLLIARLDHQDAIARLNLLKLIKAVYEHHPRPKQLIVENDLPHKLQNLIEERRDGQRSGGQVLVKQMATSLLKALHINTVL 1453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5199118 5223089 + Cp4.1LG03g04860.1 Cpe03g00830 466547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00830 1453 PANTHER MAP KINASE KINASE KINASE 120 198 - -
Cpe03g00830 1453 PANTHER MAP KINASE KINASE KINASE 2 121 - -
Cpe03g00830 1453 Gene3D - 1104 1448 IPR011989 -
Cpe03g00830 1453 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 120 198 - -
Cpe03g00830 1453 MobiDBLite consensus disorder prediction 917 952 - -
Cpe03g00830 1453 SUPERFAMILY ARM repeat 605 797 IPR016024 -
Cpe03g00830 1453 Gene3D Transferase(Phosphotransferase) domain 1 101 387 - -
Cpe03g00830 1453 SUPERFAMILY ARM repeat 1114 1427 IPR016024 -
Cpe03g00830 1453 MobiDBLite consensus disorder prediction 436 467 - -
Cpe03g00830 1453 MobiDBLite consensus disorder prediction 447 467 - -
Cpe03g00830 1453 Pfam Protein tyrosine and serine/threonine kinase 22 104 IPR001245 GO:0004672|GO:0006468
Cpe03g00830 1453 MobiDBLite consensus disorder prediction 850 904 - -
Cpe03g00830 1453 Pfam Protein kinase domain 120 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g00830 1453 Gene3D - 598 800 IPR011989 -
Cpe03g00830 1453 Gene3D Phosphorylase Kinase; domain 1 13 100 - -
Cpe03g00830 1453 ProSiteProfiles Protein kinase domain profile. 20 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g00830 1453 MobiDBLite consensus disorder prediction 884 900 - -
Cpe03g00830 1453 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Cpe03g00830 1453 SUPERFAMILY Protein kinase-like (PK-like) 10 352 IPR011009 -
Cpe03g00830 1453 MobiDBLite consensus disorder prediction 856 870 - -
Cpe03g00830 1453 SMART arm_5 716 759 IPR000225 GO:0005515
Cpe03g00830 1453 SMART arm_5 631 671 IPR000225 GO:0005515
Cpe03g00830 1453 SMART arm_5 1187 1231 IPR000225 GO:0005515
Cpe03g00830 1453 SMART arm_5 1233 1272 IPR000225 GO:0005515
Cpe03g00830 1453 MobiDBLite consensus disorder prediction 920 937 - -
Cpe03g00830 1453 PANTHER MAP KINASE KINASE KINASE 313 359 - -
Cpe03g00830 1453 PANTHER MAP KINASE KINASE KINASE 369 1409 - -
Cpe03g00830 1453 PANTHER MAP KINASE KINASE KINASE 266 290 - -
Cpe03g00830 1453 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 313 359 - -
Cpe03g00830 1453 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 369 1409 - -
Cpe03g00830 1453 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 2 121 - -
Cpe03g00830 1453 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 266 290 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00830 Cpe-Chr3:5199118 Cpe12g00214 Cpe-Chr12:1402800 7.37E-40 dispersed
Cpe02g01551 Cpe-Chr2:13156043 Cpe03g00830 Cpe-Chr3:5199118 8.05E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62284 PF00069 Pkinase 1.10E-17 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00830 - - cmo:103500361 2042.7