Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00831 ATGGCGGCTGCAGCTACAACAAGCGTTGTACCGCCGAATCGGCGGCGTGCGGTTACTGCCCCGGAAGACAAGTTGGAATTCGAGACGACGGAGGGGGTTGAGCCGATCTTGAGTTTTGATCAGATGGGCATTAAGGATGATCTTCTCCGTGGAATATATGCATACGGTTTTGAAAAGCCCTCGGCTATTCAGCAGAGAGCTGTGAGGCCGATTATTGAGGGTCGAGATGTTATTGCTCAGGCCCAATCTGGAACTGGCAAGACCTCCATGATTGCACTTACCGTTTGCCAGGTGGTTGATACATCCAGTAGAGAGGTGCAGGCCTTGATCTTGTCCCCTACGAGAGAATTGGCAACCCAGACAGAGAAGGTTATATTGGCAATTGGCGACTACATTAATATACAAGCACACTCATGTATCGGAGGAAAAAGTGTGGGTGAAGATATCAGAAAGCTTGAGTTTGGAGTTCAGGTTGTGTCAGGAACTCCTGGAAGAGTCTGTGACATGATCAAGAGAAGGACACTGCGTACCCGAGCCATTAAGCTGTTAATTTTGGATGAGTCTGATGAAATGCTGAGCAGAGGGTTTAAAGACCAAATTTATGATGTATATCGATATCTCCCACCAGAACTTCAGGTTGAATGGTTGACTGAGAAGATGCGAAGTAATAACTTCACAGTTTCCCATATGCATGGGGACATGCCTCAAAAGGAAAGAGATGCAATCATGGGGGAGTTCCGATCTGGAACTACACGTGTCCTAATCACTACTGATGTTTGGGCAAGAGGGCTTGATGTTCAGCAGGCAAGTTATTGGTTCTTTTATTTTATTGATCTTTTTCAATGCGTCGTATCACTAGTGATAAATTATGACCTTCCAAACAATCGAGAGCTTTACATTCACAGGATAGGAAGGTCGGGTCGGTTTGGGCGCAAGGGTGTTGCTATTAACTTTGTGAAAAGTGATGACATCAAGATCCTGAGAGATATTGAGCAATACTACAGTACCCAGATTGATGAGATGCCCATGAACGTTGCTGATTTGATTTAA 1050 45.24 MAAAATTSVVPPNRRRAVTAPEDKLEFETTEGVEPILSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQVVDTSSREVQALILSPTRELATQTEKVILAIGDYINIQAHSCIGGKSVGEDIRKLEFGVQVVSGTPGRVCDMIKRRTLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPELQVEWLTEKMRSNNFTVSHMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQASYWFFYFIDLFQCVVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5222609 5227370 - Cp4.1LG03g04800.1 Cpe03g00831 466548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00831 349 Gene3D - 214 348 IPR027417 -
Cpe03g00831 349 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 21 213 - -
Cpe03g00831 349 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 213 342 - -
Cpe03g00831 349 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 344 IPR027417 -
Cpe03g00831 349 Pfam DEAD/DEAH box helicase 62 208 IPR011545 GO:0003676|GO:0005524
Cpe03g00831 349 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 179 349 IPR001650 -
Cpe03g00831 349 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 65 IPR014014 GO:0003724
Cpe03g00831 349 Pfam Helicase conserved C-terminal domain 213 310 IPR001650 -
Cpe03g00831 349 SMART ultradead3 56 237 IPR014001 -
Cpe03g00831 349 Gene3D - 11 213 IPR027417 -
Cpe03g00831 349 CDD SF2_C_DEAD 212 319 - -
Cpe03g00831 349 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 217 IPR027417 -
Cpe03g00831 349 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 238 IPR014001 -
Cpe03g00831 349 SMART helicmild6 214 310 IPR001650 -
Cpe03g00831 349 PANTHER BNAC03G41130D PROTEIN 21 213 - -
Cpe03g00831 349 PANTHER BNAC03G41130D PROTEIN 213 342 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01732 Cpe-Chr2:14178581 Cpe03g00831 Cpe-Chr3:5222609 2.64E-102 dispersed
Cpe03g00831 Cpe-Chr3:5222609 Cpe11g00363 Cpe-Chr11:1999303 2.23E-108 dispersed
Cpe02g01552 Cpe-Chr2:13173787 Cpe03g00831 Cpe-Chr3:5222609 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00831 K13025 - bgt:106058106 418.698