Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe03g00864 | ATGTGTGGTGGTCCAGAAAAATCCAATTCTGCATCTACTACTTCGGCAAGATTACCTAACCCCAAAGACATGAATCATTTAACTGTTGATTGTGAGGATTCTTTTTATAGTTTACTGGAGCTTGCTTCTGACAACGATGCAGAAGGCTTCAAGAGTATGATGGAGTCTGATTTGTTTTCTCTGAACAAGTCTGGACTCTGGTATGTTCGTCAAAAAGGTTCAAAACAAGTTGTTAATGAGCACAGAACGCCTCTTATGGTTGCTGCCACATATGGTTGTGTTGATGTTCTGAAGCTTATACTATCATATCCTGAGGTTGATGTTAATCTCTCATCTGGCACAGATAAGAGCACTGCTCTCCACTGTGCTACTTCCAGTGGTTCTGTGAATGCTGTTGATATTGTCGATTTGCTATTATCTGCTGGTGCTGACCCGAAAACCAAGGATGTTAATGGTGACCGCCCCGTGGATGTCATTTTCGTTCACCCGAAATTGCAGAAGCAGAACACAAGGTTCAGGCTTGAGGAGCTTCTCAATAATCATTCAAGTGGATCTTTGGATGTGTCCTGTTTACATTTGTCAATCAAAACGCCTGATTCAGAGTCACCGCCACTTTCCTCGTCGTTGGAGGATGAGTTTCGATCTACACCCAAGTCTATTTCTTCTCCCAAATTTACTGATGGGTTTGCAAACTCTACAAAGGAGAAAAAAGAATATCCAATTGACCCATCACTTCCTGACATCAAGAACAGCATATATGCAACTGATGAGTTTCGTATGTTTTCTTTCAAGGTGAGACCTTGTTCTCGGGCGTATTCTCATGATTGGACCGAGTGTCCTTTTGTCCACCCAGGGGAGAATGCCCGCAGAAGAGACCCAAGGAAGTTTCACTACAGCTGTGTTCCTTGCCCTGACTTTAGAAAGGGGGCTTGCAGGCATGGGGATATGTGTGAATATGCACATGGAGTATTCGAGTGTTGGCTTCACCCAGCACAGTATCGAACTCGCCTTTGCAAGGATGGCACCAGTTGCAATAGGAGGGTCTGCTTCTTTGCTCACACTAACGAAGAACTAAGGCCATTGTATGTGTCCACTGGATCTGCTGTCCCGTCCCCACGATCAATTGGATCTGCTCCAACTGTAATGGATATGGCTACTGCATTGGGTCTTCTGCCTGGTTCCCCTTCATCAGTGTCAGCTTTATCTCCATCTCCATTTACTCAGACCATGTCTCCCTCTTCTAATGGTGTTTGTCACTCTTCTGTGAACTGGCAGCAACCAAATGTACCGACTCTTCATTTACCAGGAAGTAACCTTCAATCCAGCCGATTGAGGTCGTCTCTGAATGCCAGGGATATGCCTCTGGAAGATTTGAACGTCCTGCCTGACTTCAACAGCCACAGCNTGTACCGACTCTTCATTTACCAGGAACCTTGTCCGACTCCTGTGTCTGTGAGCCGATCTGGCTGGACCCAAACTCTATCTCCTAACAATCTTGAAGAATTATTTTCTTCTGAGATCTCTTCGTCTCCTAGATTCTCCGATCCAGCTGCCAATGTCTTTTCCCCTACGCGCAAATCAACAATGCTAAACCAATTCCAGCAGCAGCAGCAGAACATGTTATCACCTATCAATACAAGCATTATGTCCCCTAAGAATGTTGATCATCATTTGTTGCAGGCCTCTTATGGAGTTTCATCCCCGGGAAGGATGTCGCCAAGAAACACCGAGCCACATTCACCTATGGGATCTAGGTTCTCCGCCTTCGTACAGCGTGAAAAGCATAATCTGCGCACTCTCAGTTCATGGGAGCTTGGATCTAATGTCCCAAGCTCATTGATCGGATCTCCTATCAATTCTTTGCCTAAATGGGGGTCCCCCAATGGAAAGGTGGATTGGTCGGTTGGTAAGAATGAACTGGGTCAACAAATGCGAAGGTCATCTTCTTTTGAAATGGGAAATAACGGGGAGGAGCCTGACTTATCATGGGTTCAAACCCTTGTGAAGGAATCCCCACCTGAGATGCTTAAAGAGAAGCTGGCAGTGCCTGGGAGGGGCGGTGCAGCATCCGGTGAGGGTCTAACTACTACTAAACCACAATTAGAATCCACTGATCATTCTGTGATTGGAGCTTGGCTTGAGCAGATGCAGCTTGATCAGCTTGTAGTGTAG | 2172 | 45.81 | MCGGPEKSNSASTTSARLPNPKDMNHLTVDCEDSFYSLLELASDNDAEGFKSMMESDLFSLNKSGLWYVRQKGSKQVVNEHRTPLMVAATYGCVDVLKLILSYPEVDVNLSSGTDKSTALHCATSSGSVNAVDIVDLLLSAGADPKTKDVNGDRPVDVIFVHPKLQKQNTRFRLEELLNNHSSGSLDVSCLHLSIKTPDSESPPLSSSLEDEFRSTPKSISSPKFTDGFANSTKEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRHGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTNEELRPLYVSTGSAVPSPRSIGSAPTVMDMATALGLLPGSPSSVSALSPSPFTQTMSPSSNGVCHSSVNWQQPNVPTLHLPGSNLQSSRLRSSLNARDMPLEDLNVLPDFNSHSXYRLFIYQEPCPTPVSVSRSGWTQTLSPNNLEELFSSEISSSPRFSDPAANVFSPTRKSTMLNQFQQQQQNMLSPINTSIMSPKNVDHHLLQASYGVSSPGRMSPRNTEPHSPMGSRFSAFVQREKHNLRTLSSWELGSNVPSSLIGSPINSLPKWGSPNGKVDWSVGKNELGQQMRRSSSFEMGNNGEEPDLSWVQTLVKESPPEMLKEKLAVPGRGGAASGEGLTTTKPQLESTDHSVIGAWLEQMQLDQLVV | 723 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 5448764 | 5451063 | + | Cp4.1LG03g04560.1 | Cpe03g00864 | 466581 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe03g00864 | 723 | MobiDBLite | consensus disorder prediction | 680 | 699 | - | - | |
Cpe03g00864 | 723 | ProSiteProfiles | Zinc finger C3H1-type profile. | 302 | 324 | IPR000571 | GO:0046872 | |
Cpe03g00864 | 723 | MobiDBLite | consensus disorder prediction | 565 | 582 | - | - | |
Cpe03g00864 | 723 | Pfam | Ankyrin repeats (3 copies) | 76 | 149 | IPR002110 | GO:0005515 | |
Cpe03g00864 | 723 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cpe03g00864 | 723 | MobiDBLite | consensus disorder prediction | 563 | 583 | - | - | |
Cpe03g00864 | 723 | SUPERFAMILY | Ankyrin repeat | 79 | 159 | IPR036770 | - | |
Cpe03g00864 | 723 | SMART | ANK_2a | 80 | 110 | IPR002110 | GO:0005515 | |
Cpe03g00864 | 723 | SMART | ANK_2a | 115 | 147 | IPR002110 | GO:0005515 | |
Cpe03g00864 | 723 | Gene3D | - | 297 | 360 | - | - | |
Cpe03g00864 | 723 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cpe03g00864 | 723 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 | 19 | 721 | - | - | |
Cpe03g00864 | 723 | Gene3D | - | 32 | 182 | IPR036770 | - | |
Cpe03g00864 | 723 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 302 | 322 | IPR000571 | GO:0046872 | |
Cpe03g00864 | 723 | ProSiteProfiles | Ankyrin repeat region circular profile. | 115 | 149 | - | - | |
Cpe03g00864 | 723 | ProSiteProfiles | Ankyrin repeat profile. | 115 | 150 | IPR002110 | GO:0005515 | |
Cpe03g00864 | 723 | SMART | c3hfinal6 | 297 | 323 | IPR000571 | GO:0046872 | |
Cpe03g00864 | 723 | SMART | c3hfinal6 | 332 | 355 | IPR000571 | GO:0046872 | |
Cpe03g00864 | 723 | PANTHER | UNKEMPT FAMILY MEMBER | 19 | 721 | IPR045234 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g00399 | Cpe-Chr3:2174527 | Cpe03g00864 | Cpe-Chr3:5448764 | 5.73E-66 | dispersed | |
Cpe03g00864 | Cpe-Chr3:5448764 | Cpe08g01381 | Cpe-Chr8:9920910 | 0 | dispersed | |
Cpe02g01577 | Cpe-Chr2:13312215 | Cpe03g00864 | Cpe-Chr3:5448764 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49213 | PF12796 | Ank_2 | 5.30E-10 | CL0465 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe03g00864 | - | - | cpep:111790396 | 1392.87 |