Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00864 ATGTGTGGTGGTCCAGAAAAATCCAATTCTGCATCTACTACTTCGGCAAGATTACCTAACCCCAAAGACATGAATCATTTAACTGTTGATTGTGAGGATTCTTTTTATAGTTTACTGGAGCTTGCTTCTGACAACGATGCAGAAGGCTTCAAGAGTATGATGGAGTCTGATTTGTTTTCTCTGAACAAGTCTGGACTCTGGTATGTTCGTCAAAAAGGTTCAAAACAAGTTGTTAATGAGCACAGAACGCCTCTTATGGTTGCTGCCACATATGGTTGTGTTGATGTTCTGAAGCTTATACTATCATATCCTGAGGTTGATGTTAATCTCTCATCTGGCACAGATAAGAGCACTGCTCTCCACTGTGCTACTTCCAGTGGTTCTGTGAATGCTGTTGATATTGTCGATTTGCTATTATCTGCTGGTGCTGACCCGAAAACCAAGGATGTTAATGGTGACCGCCCCGTGGATGTCATTTTCGTTCACCCGAAATTGCAGAAGCAGAACACAAGGTTCAGGCTTGAGGAGCTTCTCAATAATCATTCAAGTGGATCTTTGGATGTGTCCTGTTTACATTTGTCAATCAAAACGCCTGATTCAGAGTCACCGCCACTTTCCTCGTCGTTGGAGGATGAGTTTCGATCTACACCCAAGTCTATTTCTTCTCCCAAATTTACTGATGGGTTTGCAAACTCTACAAAGGAGAAAAAAGAATATCCAATTGACCCATCACTTCCTGACATCAAGAACAGCATATATGCAACTGATGAGTTTCGTATGTTTTCTTTCAAGGTGAGACCTTGTTCTCGGGCGTATTCTCATGATTGGACCGAGTGTCCTTTTGTCCACCCAGGGGAGAATGCCCGCAGAAGAGACCCAAGGAAGTTTCACTACAGCTGTGTTCCTTGCCCTGACTTTAGAAAGGGGGCTTGCAGGCATGGGGATATGTGTGAATATGCACATGGAGTATTCGAGTGTTGGCTTCACCCAGCACAGTATCGAACTCGCCTTTGCAAGGATGGCACCAGTTGCAATAGGAGGGTCTGCTTCTTTGCTCACACTAACGAAGAACTAAGGCCATTGTATGTGTCCACTGGATCTGCTGTCCCGTCCCCACGATCAATTGGATCTGCTCCAACTGTAATGGATATGGCTACTGCATTGGGTCTTCTGCCTGGTTCCCCTTCATCAGTGTCAGCTTTATCTCCATCTCCATTTACTCAGACCATGTCTCCCTCTTCTAATGGTGTTTGTCACTCTTCTGTGAACTGGCAGCAACCAAATGTACCGACTCTTCATTTACCAGGAAGTAACCTTCAATCCAGCCGATTGAGGTCGTCTCTGAATGCCAGGGATATGCCTCTGGAAGATTTGAACGTCCTGCCTGACTTCAACAGCCACAGCNTGTACCGACTCTTCATTTACCAGGAACCTTGTCCGACTCCTGTGTCTGTGAGCCGATCTGGCTGGACCCAAACTCTATCTCCTAACAATCTTGAAGAATTATTTTCTTCTGAGATCTCTTCGTCTCCTAGATTCTCCGATCCAGCTGCCAATGTCTTTTCCCCTACGCGCAAATCAACAATGCTAAACCAATTCCAGCAGCAGCAGCAGAACATGTTATCACCTATCAATACAAGCATTATGTCCCCTAAGAATGTTGATCATCATTTGTTGCAGGCCTCTTATGGAGTTTCATCCCCGGGAAGGATGTCGCCAAGAAACACCGAGCCACATTCACCTATGGGATCTAGGTTCTCCGCCTTCGTACAGCGTGAAAAGCATAATCTGCGCACTCTCAGTTCATGGGAGCTTGGATCTAATGTCCCAAGCTCATTGATCGGATCTCCTATCAATTCTTTGCCTAAATGGGGGTCCCCCAATGGAAAGGTGGATTGGTCGGTTGGTAAGAATGAACTGGGTCAACAAATGCGAAGGTCATCTTCTTTTGAAATGGGAAATAACGGGGAGGAGCCTGACTTATCATGGGTTCAAACCCTTGTGAAGGAATCCCCACCTGAGATGCTTAAAGAGAAGCTGGCAGTGCCTGGGAGGGGCGGTGCAGCATCCGGTGAGGGTCTAACTACTACTAAACCACAATTAGAATCCACTGATCATTCTGTGATTGGAGCTTGGCTTGAGCAGATGCAGCTTGATCAGCTTGTAGTGTAG 2172 45.81 MCGGPEKSNSASTTSARLPNPKDMNHLTVDCEDSFYSLLELASDNDAEGFKSMMESDLFSLNKSGLWYVRQKGSKQVVNEHRTPLMVAATYGCVDVLKLILSYPEVDVNLSSGTDKSTALHCATSSGSVNAVDIVDLLLSAGADPKTKDVNGDRPVDVIFVHPKLQKQNTRFRLEELLNNHSSGSLDVSCLHLSIKTPDSESPPLSSSLEDEFRSTPKSISSPKFTDGFANSTKEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRHGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTNEELRPLYVSTGSAVPSPRSIGSAPTVMDMATALGLLPGSPSSVSALSPSPFTQTMSPSSNGVCHSSVNWQQPNVPTLHLPGSNLQSSRLRSSLNARDMPLEDLNVLPDFNSHSXYRLFIYQEPCPTPVSVSRSGWTQTLSPNNLEELFSSEISSSPRFSDPAANVFSPTRKSTMLNQFQQQQQNMLSPINTSIMSPKNVDHHLLQASYGVSSPGRMSPRNTEPHSPMGSRFSAFVQREKHNLRTLSSWELGSNVPSSLIGSPINSLPKWGSPNGKVDWSVGKNELGQQMRRSSSFEMGNNGEEPDLSWVQTLVKESPPEMLKEKLAVPGRGGAASGEGLTTTKPQLESTDHSVIGAWLEQMQLDQLVV 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5448764 5451063 + Cp4.1LG03g04560.1 Cpe03g00864 466581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00864 723 MobiDBLite consensus disorder prediction 680 699 - -
Cpe03g00864 723 ProSiteProfiles Zinc finger C3H1-type profile. 302 324 IPR000571 GO:0046872
Cpe03g00864 723 MobiDBLite consensus disorder prediction 565 582 - -
Cpe03g00864 723 Pfam Ankyrin repeats (3 copies) 76 149 IPR002110 GO:0005515
Cpe03g00864 723 MobiDBLite consensus disorder prediction 1 23 - -
Cpe03g00864 723 MobiDBLite consensus disorder prediction 563 583 - -
Cpe03g00864 723 SUPERFAMILY Ankyrin repeat 79 159 IPR036770 -
Cpe03g00864 723 SMART ANK_2a 80 110 IPR002110 GO:0005515
Cpe03g00864 723 SMART ANK_2a 115 147 IPR002110 GO:0005515
Cpe03g00864 723 Gene3D - 297 360 - -
Cpe03g00864 723 MobiDBLite consensus disorder prediction 1 21 - -
Cpe03g00864 723 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 19 721 - -
Cpe03g00864 723 Gene3D - 32 182 IPR036770 -
Cpe03g00864 723 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 322 IPR000571 GO:0046872
Cpe03g00864 723 ProSiteProfiles Ankyrin repeat region circular profile. 115 149 - -
Cpe03g00864 723 ProSiteProfiles Ankyrin repeat profile. 115 150 IPR002110 GO:0005515
Cpe03g00864 723 SMART c3hfinal6 297 323 IPR000571 GO:0046872
Cpe03g00864 723 SMART c3hfinal6 332 355 IPR000571 GO:0046872
Cpe03g00864 723 PANTHER UNKEMPT FAMILY MEMBER 19 721 IPR045234 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00399 Cpe-Chr3:2174527 Cpe03g00864 Cpe-Chr3:5448764 5.73E-66 dispersed
Cpe03g00864 Cpe-Chr3:5448764 Cpe08g01381 Cpe-Chr8:9920910 0 dispersed
Cpe02g01577 Cpe-Chr2:13312215 Cpe03g00864 Cpe-Chr3:5448764 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49213 PF12796 Ank_2 5.30E-10 CL0465 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00864 - - cpep:111790396 1392.87