Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00867 TTGAAGTTAATTTTACAAGCGCGTTTTCCTGTTTTCTATATTCAGCTTCCTATTGCATTGTTTGGAGGGTCTGGAAACTATGCCTCTGCTCTGTATATAGCTGCAGTAAAAGCTAATTCTTTAGACAACGTGGAGTCTGAGCTTGTTAACTTTGTCGAGGCTATTAAGAAAAGCCCAACATTTTCTCAGTTCACAATGGACCTGTCAGTTCCAGCTGAAACTAGAGTTAAGGCTATCACTGAAATTTCTGCGGAAGCTAAATTTTCGGATGTCGTAAAGAACTTTTTAGTTGTGCTGGCTGAGAATGGGAGGCTGAGATATGTAGATAGCATAGCAAAGAGATTTTTGGAGTTGACTATGGCTCATAGGGGAGAAGTTGAAGCAGTTGTTACTACTGTTATTCCCATTCCACCACAAGAAGAGAAAGAATTGACGGAGACGTTGCAAGATATAATTGGACAGGGCAAGAAGGTTAAGCTCGAGCAGAAGATTGATCCCAGCATACTTGGTGGTCTAGTTGTAGAATTTGGCGAGAAGGTATTGGACATGTCCATTAAAACCCGGGCACGTCAAATGGAGAGGTTCTTGCGTCAACCTGTAACTTTTGATGGACTCTGA 618 41.59 LKLILQARFPVFYIQLPIALFGGSGNYASALYIAAVKANSLDNVESELVNFVEAIKKSPTFSQFTMDLSVPAETRVKAITEISAEAKFSDVVKNFLVVLAENGRLRYVDSIAKRFLELTMAHRGEVEAVVTTVIPIPPQEEKELTETLQDIIGQGKKVKLEQKIDPSILGGLVVEFGEKVLDMSIKTRARQMERFLRQPVTFDGL 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5479933 5481809 - Cp4.1LG03g04520.1 Cpe03g00867 466584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00867 205 Hamap ATP synthase subunit delta [atpD]. 19 198 IPR000711 GO:0015986|GO:0046933
Cpe03g00867 205 Gene3D - 23 116 IPR026015 -
Cpe03g00867 205 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 158 177 IPR020781 GO:0015986|GO:0016020|GO:0046933
Cpe03g00867 205 TIGRFAM ATP_synt_delta: ATP synthase F1, delta subunit 26 195 IPR000711 GO:0015986|GO:0046933
Cpe03g00867 205 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 24 125 IPR026015 -
Cpe03g00867 205 PRINTS ATP synthase delta subunit signature 171 189 IPR000711 GO:0015986|GO:0046933
Cpe03g00867 205 PRINTS ATP synthase delta subunit signature 104 118 IPR000711 GO:0015986|GO:0046933
Cpe03g00867 205 PRINTS ATP synthase delta subunit signature 93 104 IPR000711 GO:0015986|GO:0046933
Cpe03g00867 205 PRINTS ATP synthase delta subunit signature 156 171 IPR000711 GO:0015986|GO:0046933
Cpe03g00867 205 PRINTS ATP synthase delta subunit signature 23 42 IPR000711 GO:0015986|GO:0046933
Cpe03g00867 205 Pfam ATP synthase delta (OSCP) subunit 25 194 IPR000711 GO:0015986|GO:0046933
Cpe03g00867 205 PANTHER ATP SYNTHASE DELTA CHAIN 14 198 IPR000711 GO:0015986|GO:0046933
Cpe03g00867 205 PANTHER ATP SYNTHASE SUBUNIT O, MITOCHONDRIAL 14 198 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00867 Cpe12g00823 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00867 Cpe-Chr3:5479933 Cpe06g00964 Cpe-Chr6:9084013 1.59E-09 dispersed
Cpe12g00823 Cpe-Chr12:7341391 Cpe03g00867 Cpe-Chr3:5479933 4.74E-106 wgd
Cpe02g01582 Cpe-Chr2:13335417 Cpe03g00867 Cpe-Chr3:5479933 2.24E-124 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00867 K02137 - tcc:18614630 307.375