Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00910 ATGGCCGCTTATTCTTCTTGGTTGGATTCTGTTGACACTTCTCTAGATCTCAATCTTCAACCTCTCAGATTCTCCGGCGAGGCTCCGAAGGAGAGGAATTACATGGAGGTTGAGAGGAAGGTTTCTGTGAAAGAAGAGACTGGAGCTTTAATGGAGGAATTGAAGAGGGTGAATGCAGAGAACAAGAAATTGACTGAAATGTTGTCTGTTGTTGTTAAAGATGGATATCAATGGAGGAAATATGGCCAAAAGGTCACTAGAGATAATCCTTGTCCTAGAGCTTATTTCAAATGCTCTTTTGCCCCAACCTGCCCTGTCAAGAAGAAGGTTCAAAGAAGTGTAGAAGATCAATCAGTTCTGGTGGCCACATATGAAGGCGAACATAACCATCCACAAGCATCTCAGATCGACCCCACTTCCGCCCGTTCTGTCAGCATAGCTCCGGCACCGCTCACGGCAGCTCCGAGATCCTTGTCTACGCCGCCCAAACCGACGACAGAAGCTAAAACGATTTCCAACCCAAGATTTGAGTCGCCGGAAGTGCAACAGTTTCTCGTCGAACAGATGGCTTCTTCGTTGACAAAAGATCCCAATTTTACGGCGGCGCTAGCGGCGGCGATATCGGGAAAGATTTTCCAACATTAA 645 46.82 MAAYSSWLDSVDTSLDLNLQPLRFSGEAPKERNYMEVERKVSVKEETGALMEELKRVNAENKKLTEMLSVVVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPTCPVKKKVQRSVEDQSVLVATYEGEHNHPQASQIDPTSARSVSIAPAPLTAAPRSLSTPPKPTTEAKTISNPRFESPEVQQFLVEQMASSLTKDPNFTAALAAAISGKIFQH 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5849672 5850891 - Cp4.1LG03g08890.1 Cpe03g00910 466627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00910 214 MobiDBLite consensus disorder prediction 151 176 - -
Cpe03g00910 214 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 70 213 IPR044810 GO:0003700
Cpe03g00910 214 ProSiteProfiles WRKY domain profile. 71 133 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe03g00910 214 PANTHER WRKY TRANSCRIPTION FACTOR 40-RELATED 70 213 - -
Cpe03g00910 214 PANTHER WRKY TRANSCRIPTION FACTOR 40-RELATED 7 71 - -
Cpe03g00910 214 Gene3D WRKY domain 58 133 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe03g00910 214 SUPERFAMILY WRKY DNA-binding domain 70 132 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe03g00910 214 MobiDBLite consensus disorder prediction 158 176 - -
Cpe03g00910 214 SMART WRKY_cls 72 132 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe03g00910 214 Pfam WRKY DNA -binding domain 73 131 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe03g00910 214 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 7 71 IPR044810 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g01617 Cpe03g00910 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00910 Cpe-Chr3:5849672 Cpe06g00298 Cpe-Chr6:1636222 2.16E-47 dispersed
Cpe02g01617 Cpe-Chr2:13545236 Cpe03g00910 Cpe-Chr3:5849672 1.06E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49216 PF03106 WRKY 3.00E-23 CL0274 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00910 - - cpep:111789706 295.434