Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe03g00911 | ATGGCGGGTAAGGCGGCGCCCGCGAGGCATGTTCTGTTTGGAAAATACGAAATGGGTCGGCTATTGGGGAAAGGAACCTTTGCGAAGGTCTACCATGGAAGAAACTTGATCACCCACGACACTGTCGCCATTAAAGTCATCCTCAAGGACAGGGTAAAGAAACAGGGACTTCTTGACCAAGTCCGGCGAGAAATTTCTGTCATGGGGTTGGTTCGTCATCCCCATATAGTGGAATTGAAAGAAGTCATGGCCACGAAATCCAAGGTGTATTTTGTGATGGAATACGTTAATGGAGGCGAACTGTTTGTTAAATTGTCTCAACAAGGAAAATTGACTGAAGATGGAGGAAGAAAGTACTTTCAACAGCTTCTCTCCGCCGTGGACTTTTGCCACAGCCGTGGTGTCTCTCACCGTGATTTGAAGCCTGAAAATCTCCTTCTCGACGAGAATGGGAATTTGAAGGTATCTGATTTTGGTCTCTCCGCCCTGCCGGAGCAGCTCCGGATCGACGGATTGCTTCACACACGGTGTGGAACACCGGCGTATGTAGCTCCTGAGGTGCTCAGAAAGAGGGGATACGAGGGCGCTAAGTCGGATCTTTGGTCTTGTGGAGTGATTTTGTTTGTGTTGCTTGCTGGGTCTCTGCCATTTAAAGCTGATAATGTGATGAAGTTGTATAGGAAGATTTTCAAGGCGGAGTTTGAGTTTCCTCCTTGGTTTTCTTCAGAAGCTAAGGAAATGGTGTCCAAGCTTCTGGTTGTTGATCCTGAGAAGAGAGCTTCAATGGATGAGATAATGCAGAGTTCTTGGTTTCAAAAGGGCTTCACAAAGCCACTTTCATTCAATGACAAAGATGAATTCAACAGTGAAATCTCTGAATTGGCGAATCCCAAGTTGTTGTCATCTTCTCCTCCTTTCTACAATGCCTTCGAGTTCATCTCCACAATGTCCTCTGGTTTTGACTTGACTAGTTTGTTTGAAAGCAAGAAGAAACAAGCCTCAATTTTCACTTCAAAATGCTCTGCTTCAGCCATTATAGCCAAGCTTCAGTCTCTAGCGCAGAAGCTGAACTTCAAGGCTACTAATCAGAGGGAGTTCAAGGTGAGACTGCAGGCCAAGGAGGAGGGGAGGAAAGGGAAGCTGGCGGTGACGATGGAGGTTTACGAGGTAGCGCCGGAGCTGGCGGTGGTCGAGTTCTCGAAGTCGGCGGGGGACACATTGGAGTACAATAAGTTTTGTGAGAAGGATGTGAGGCCTGCATTGAAGGACATAGTTTGGAGCTGGCAAGGAGAGAATGAGTGCCTATAA | 1308 | 47.17 | MAGKAAPARHVLFGKYEMGRLLGKGTFAKVYHGRNLITHDTVAIKVILKDRVKKQGLLDQVRREISVMGLVRHPHIVELKEVMATKSKVYFVMEYVNGGELFVKLSQQGKLTEDGGRKYFQQLLSAVDFCHSRGVSHRDLKPENLLLDENGNLKVSDFGLSALPEQLRIDGLLHTRCGTPAYVAPEVLRKRGYEGAKSDLWSCGVILFVLLAGSLPFKADNVMKLYRKIFKAEFEFPPWFSSEAKEMVSKLLVVDPEKRASMDEIMQSSWFQKGFTKPLSFNDKDEFNSEISELANPKLLSSSPPFYNAFEFISTMSSGFDLTSLFESKKKQASIFTSKCSASAIIAKLQSLAQKLNFKATNQREFKVRLQAKEEGRKGKLAVTMEVYEVAPELAVVEFSKSAGDTLEYNKFCEKDVRPALKDIVWSWQGENECL | 435 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 5862134 | 5863441 | + | Cp4.1LG03g08900.1 | Cpe03g00911 | 466628 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe03g00911 | 435 | PANTHER | - | 9 | 434 | - | - | |
Cpe03g00911 | 435 | Pfam | NAF domain | 304 | 360 | IPR004041 | GO:0007165 | |
Cpe03g00911 | 435 | SUPERFAMILY | Protein kinase-like (PK-like) | 12 | 272 | IPR011009 | - | |
Cpe03g00911 | 435 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 135 | 147 | IPR008271 | GO:0004672|GO:0006468 | |
Cpe03g00911 | 435 | CDD | CIPK_C | 308 | 422 | - | - | |
Cpe03g00911 | 435 | ProSiteProfiles | Protein kinase domain profile. | 16 | 271 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe03g00911 | 435 | PANTHER | CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 25-RELATED | 9 | 434 | - | - | |
Cpe03g00911 | 435 | Pfam | Protein kinase domain | 16 | 271 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe03g00911 | 435 | Gene3D | Transferase(Phosphotransferase) domain 1 | 9 | 309 | - | - | |
Cpe03g00911 | 435 | ProSitePatterns | Protein kinases ATP-binding region signature. | 22 | 54 | IPR017441 | GO:0005524 | |
Cpe03g00911 | 435 | Gene3D | Kinase associated domain 1, KA1 | 310 | 427 | - | - | |
Cpe03g00911 | 435 | SMART | serkin_6 | 16 | 271 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe03g00911 | 435 | ProSiteProfiles | NAF domain profile. | 302 | 327 | IPR018451 | GO:0007165 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe02g01618 | Cpe03g00911 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe02g00329 | Cpe-Chr2:1747908 | Cpe03g00911 | Cpe-Chr3:5862134 | 0 | dispersed | |
Cpe03g00911 | Cpe-Chr3:5862134 | Cpe20g00467 | Cpe-Chr20:2703149 | 3.30E-170 | dispersed | |
Cpe18g00670 | Cpe-Chr18:6742435 | Cpe03g00911 | Cpe-Chr3:5862134 | 1.01E-26 | dispersed | |
Cpe03g00911 | Cpe-Chr3:5862134 | Cpe06g00299 | Cpe-Chr6:1642721 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
62288 | PF00069 | Pkinase | 7.10E-76 | CL0016 | Cpe | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe03g00911 | - | - | csv:101218600 | 781.171 |