Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00912 ATGGCGGCTGGAGGGTCTAGTTCTGGGCAGCCACAGTTCATTGCGAGGGCTGGAAATGAGAGTTTTTCACACGCACCATTGATCGAGAATTCGGAAACTGATCAGATTGTTGTTCCTGATAAGAAAAGCTGGAAGAACCTTTTTGCATATATGGGCCCGGGATTTCTTGTATCCATTGCATATATTGATCCTGGGAATTTTGAAACTGACCTTCAATCTGGAGCTCAGTACAAGTATGGGTTGCTTTGGATCATATTAGTGGCTTCCTGTGCTGCCCTCATTATTCAATCCTTAGCAGCAAATCTAGGGGTTGTCACAGGGAAACATTTAGCAGAGCACTGTAAAGCAGAGTACCCCAAGGTGCAAAATTTCATCCTATGGGTTCTTGCTGAGATTGCAATTGTTGCATGTGATATTCCTGAAGTTATAGGAACCGCTTTTGCATTGAATATGCTCTTCAGCATTCCTGTATGGTGTGGTGTTCTTCTAACAGGGCTTAGCACACTCTTCCTTCTTGCACTGCAGCAATATGGGATTAGAAAGCTTGAATTCTTGATTGCCTTTCTTGTATTGACCATTGCGATTTGCTTCTTCCTGGAGCTGGGCTATGCAAAGCCTGATGTTGGAGAAGTTTTTTATGGATTATTTGTCCCTCAATTAAAAGGAAGTGGTGCTACTGGTCTTGCCATTTCACTTCTTGGTGCTATGGTTATGCCACACAATCTGTTTCTTCATTCGGCACTCGTGCTCTCTAGGAAAATACCCCGATCCGTTTCTGGCATCAAGGAAGCTTGCAGATTTTATATGATCGAGAGTGGATTTGCTCTCATGGTGGCTTTCCTGATTAATGTATCAGTCATTTCAGTTAGTGGTGCAGTTTGCAATTCACCAGATCTAAATATGGAGGACCAGATGAGCTGCAATGATTTGGACTTGAATAAAGCTTCATTTTTATTGAGAAATGTATTGGGTAAATGGAGTTCAAAACTTTTTGCCATTGCTTTATTGGCATCTGGACAGAGTTCTACCATAACAGGGACCTATGCAGGACAGTATGTTATGCAGGGGTTTCTCGATTTGAAATTGACGCCATGGGTCCGAAACTTTTTAACCCGATGCTTAGCAATTGTTCCTAGTTTGATTGTTGCAATCATTGGTGGGTCTTCTGGGGCTGGGAAGCTCATCATTATTGCGTCGATGATTTTGTCATTTGAACTTCCTTTTGCTCTCATTCCTCTTCTGAAGTTCACAAGCAGCAGGACCAAGATGGGAACACATGTCAACTCCACTGCGATTACGGTATTGACATGGATTATTGGGTGCCTGATCATGGCTATAAACATATACTACCTCATGACCCGCTTCATCCACGTTCTCCTTCATAACGACCTCCAACTCGTAGCAGTCGTCTTCATAGGGATACTTGGATTTTCAGGGATGGCAATATATTTAGCAGGAATAACTTATCTGGTTTTCAGAAAGACCAAGGAGAGCACCCATCTGTTAGCACTAACAACAGAAGAAAGCCAACAACTGAGCAACACACCGAGTAAGAGGTCAGGATATGGTCTCCCAAATGAAGATTTAACAAGCATGCAGTTGCCTCAAAGAGTTAGAACTATAAGTGATGATGTAAACTGA 1641 42.54 MAAGGSSSGQPQFIARAGNESFSHAPLIENSETDQIVVPDKKSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYGLLWIILVASCAALIIQSLAANLGVVTGKHLAEHCKAEYPKVQNFILWVLAEIAIVACDIPEVIGTAFALNMLFSIPVWCGVLLTGLSTLFLLALQQYGIRKLEFLIAFLVLTIAICFFLELGYAKPDVGEVFYGLFVPQLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVSGIKEACRFYMIESGFALMVAFLINVSVISVSGAVCNSPDLNMEDQMSCNDLDLNKASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLKLTPWVRNFLTRCLAIVPSLIVAIIGGSSGAGKLIIIASMILSFELPFALIPLLKFTSSRTKMGTHVNSTAITVLTWIIGCLIMAINIYYLMTRFIHVLLHNDLQLVAVVFIGILGFSGMAIYLAGITYLVFRKTKESTHLLALTTEESQQLSNTPSKRSGYGLPNEDLTSMQLPQRVRTISDDVN 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5867368 5872696 + Cp4.1LG03g08930.1 Cpe03g00912 466629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00912 546 Hamap Divalent metal cation transporter MntH [mntH]. 32 455 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe03g00912 546 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe03g00912 546 PRINTS Natural resistance-associated macrophage protein signature 154 173 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe03g00912 546 PRINTS Natural resistance-associated macrophage protein signature 179 200 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe03g00912 546 PRINTS Natural resistance-associated macrophage protein signature 229 252 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe03g00912 546 PRINTS Natural resistance-associated macrophage protein signature 339 358 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe03g00912 546 PRINTS Natural resistance-associated macrophage protein signature 367 384 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe03g00912 546 PRINTS Natural resistance-associated macrophage protein signature 399 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe03g00912 546 PANTHER METAL TRANSPORTER NRAMP1 8 540 - -
Cpe03g00912 546 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 8 540 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe03g00912 546 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 423 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe03g00912 546 Pfam Natural resistance-associated macrophage protein 67 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02067 Cpe-Chr1:17516796 Cpe03g00912 Cpe-Chr3:5867368 5.60E-155 dispersed
Cpe03g00912 Cpe-Chr3:5867368 Cpe05g01175 Cpe-Chr5:8034289 1.61E-111 dispersed
Cpe02g01618 Cpe-Chr2:13555504 Cpe03g00912 Cpe-Chr3:5867368 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00912 K21398 - csv:101209649 956.822