Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00916 ATGGCTGGGCCAACTCCCGATGGCAACTCCGGCAATCCGCCTTCCACGCCTGACTCTCCCACCACCTCCGCCGGTTTCGAAACGGACCAGCTCCCTCATCTCAGCCAAACTTCCGACGTCTACCCCGATGAGGACGAAGCCGCTGTTGATCCTCATGTCCTTCCCGACGAGCCTGACCCCGATGAAGAGGAGGAAGGAGAGGATCTCTACCACGACAATTTCTTGGACGATTATCGGAGGATGGACGAGCATGACCAGTACGAGTCCTTGGACCTCGACGATTCATTAGAGGACGAGAGAGATTTGGATCAGATTATGGAGGACAGACGAGCTGCCGAGATAGAATTGGACACTCGCGATGCTCAGTTCACCCGTCGGAAGCTTCCTGAGCTATTACATGATCAAGACTCGGAGGATGACAATTACAGGCCTTCAAAAAGAGCAAGAGCTGATTTTCGGCCTCCAGCTGCTGCAAGAAGCTATGATGACATTGATGGTATGCAGAGTTCTCCTGGTAGATCACAAAGGGAAACTTCACGAGACGACGTGCCCATTACAGATCATTCTGTTGATGACCAATATGAGGATGAAGACGATGATGAAAATGAGAATGAGATGTATCGTGTTCAAGGGCCACTTAGAGAACATGTTACCATGGATGCGGTTCGGCGCTTTATAGGGAAAAAGTTCAAGAGATTCTTGGAAACATATGTGAATCCAAAGAGTGGAAATGGTGAGCTTGAGTACATGCGACTGATAAATGAGATGGTGTTAGCCAATAGGTGCAGTTTGGAGATTGATTACAAACAGTTTATCTTTGTCCATCCGAATATTGCAATCTGGTTGGCTGATGCACCCCAGCCCGTCTTAGAAGTTATGGAAGATGTTGCAAAGAAGGTTGTCTTTGACATACATCCAAATTACAAAAATATCCACCAAAAGATCTATGTTCGCATCAATAACTTACCAGTCTATGATCAGATTCGAAATATTAGGCAAATTCATTTAAATACCATGATTCGTATTGGGGGCGTTGTAACCCGACGCTCTGGTGTCTTCCCCCAGTTGCAGCAGGTGAAGTATGATTGTGGTAAATGTGGCACAATATTGGGACCATTTTTTCAGAATTCTTATTCAGAGGTCAAGGTTGGCTCTTGTCCTGAATGCCAGTCGAAAGGGCCATTCACAGTAAATGTCGAGCAGACTATATATAGGAACTACCAAAAGCTAACCCTCCAAGAAAGTCCAGGAATTGTGCCAGCTGGACGACTTCCTAGGTACAAGGAAGTGATACTATTGAATGATCTAATTGATTGTGCTCGTCCTGGGGAAGAAATTGAAGTTACAGGCATTTATACAAACAATTTTGACTTATCATTGAATACAAAGAACGGTTTTCCTGTATTTTCCACCGTTGTTGAAGCAAATTACATTACCAAGAAGCAAGATCTCTTTTCTGCTTACAAGCTTACCCAGGAAGACAAAGATGAGATTGAGAAGTTGTCTAAAGACCCTAGAATTGGAGAAAGGATAATCAAGTCCATTGCACCATCAATATATGGTCACGAGGACATAAAAACAGCAATTGCTCTTGCAATGTTTGGAGGTCAAGAAAAAAACGTTGAAGGGAAGCACCGGTTACGAGGCGATATCAATGTACTTCTATTAGGTGATCCTGGCACTGCGAAATCTCAATTTCTCAAGTACGTTGAGAAAACTGGGCATAGAGCAGTGTACACCACAGGGAAAGGAGCTTCAGCTGTAGGTCTAACAGCAGCAGTGCACAAGGACCCTGTCACAAGGGAGTGGACCCTTGAAGGAGGTGCCCTTGTATTAGCCGATAGAGGAATCTGTCTTATTGATGAGTTTGACAAAATGAATGATCAGGATAGGGTGAGTATCCATGAAGCAATGGAGCAACAAAGCATTAGCATATCAAAAGCTGGAATAGTCACTTCTCTTCAAGCCAGATGTTCTGTCATTGCTGCTGCCAATCCCATTGGAGGAAGGTACGACTCCTCAAAAACATTCACGCAAAATGTAGAGCTGACCGATCCTATTATTTCTCGATTTGACATCCTCTGCGTTGTTAAGGATGTGGTGGACTCTGTAACAGACGAGATGCTTGCTAAGTTTGTGGTTGATAGTCATTTCAAGTCACAACCAAAGGGCGCCAATATTGATGACAAGTCTATAAATGAATCTCAGGAGGACAGTCAAGACTCTGCAGGGCCACTGGATTCGGAGGTGCTCCCCCAAGATCTGCTGAGGAAGTACATAACTTATTCTAAGTTGAATGTTTTTCCAAGGTTGCATGATGCTGATATGGATAAGTTAACACACGTCTATGCAGAATTACGAAGGGAATCTTCTCATGGGCAAGGAGTTCCTATTGCAGTTAGGCACATAGAGTCAATGATACGCATGTCTGAAGCACATGCAAGAATGCACCTTAGACAGCACGTCACACAAGAAGATGTTGATATGGCAATTCGTGTGTTACTGGATTCTTTCATTTCAACCCAAAAATTTGGAGTGCAGAAAGCTCTGCAAAAGAGCTTCAGAAAGTACATGACTTTCAAGAAGGATTACAATGAGCTGCTTCTATATCTTCTCCGAGAGCTTGTGAAGAATGCACTTCACTTTGAGGAAATTGTTCGCGGATCTACATCGGAGCTTATCCACATTAATGTGAAATTGGAAGACCTACAAAGCAAGGCACAGGAACACGAAATTTATGATCTGAAACCCTTCTTCACCAGCTCTCATTTTTCAAATGCTAAGTTTGTGCTGGATGAAGAGCATGGTCTAATCAGGCATCATCTTGCCAGGTGA 2835 43.95 MAGPTPDGNSGNPPSTPDSPTTSAGFETDQLPHLSQTSDVYPDEDEAAVDPHVLPDEPDPDEEEEGEDLYHDNFLDDYRRMDEHDQYESLDLDDSLEDERDLDQIMEDRRAAEIELDTRDAQFTRRKLPELLHDQDSEDDNYRPSKRARADFRPPAAARSYDDIDGMQSSPGRSQRETSRDDVPITDHSVDDQYEDEDDDENENEMYRVQGPLREHVTMDAVRRFIGKKFKRFLETYVNPKSGNGELEYMRLINEMVLANRCSLEIDYKQFIFVHPNIAIWLADAPQPVLEVMEDVAKKVVFDIHPNYKNIHQKIYVRINNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCGKCGTILGPFFQNSYSEVKVGSCPECQSKGPFTVNVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFSTVVEANYITKKQDLFSAYKLTQEDKDEIEKLSKDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRFDILCVVKDVVDSVTDEMLAKFVVDSHFKSQPKGANIDDKSINESQEDSQDSAGPLDSEVLPQDLLRKYITYSKLNVFPRLHDADMDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVRGSTSELIHINVKLEDLQSKAQEHEIYDLKPFFTSSHFSNAKFVLDEEHGLIRHHLAR 944
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5971105 5977432 + Cp4.1LG03g08850.1 Cpe03g00916 466633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00916 944 Pfam MCM OB domain 327 454 IPR033762 -
Cpe03g00916 944 CDD MCM2 510 837 - -
Cpe03g00916 944 MobiDBLite consensus disorder prediction 723 748 - -
Cpe03g00916 944 MobiDBLite consensus disorder prediction 8 37 - -
Cpe03g00916 944 Pfam MCM N-terminal domain 228 321 IPR027925 -
Cpe03g00916 944 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 517 841 IPR027417 -
Cpe03g00916 944 SUPERFAMILY Nucleic acid-binding proteins 229 476 IPR012340 -
Cpe03g00916 944 Gene3D - 220 324 - -
Cpe03g00916 944 MobiDBLite consensus disorder prediction 113 158 - -
Cpe03g00916 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 548 563 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe03g00916 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 608 622 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe03g00916 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 636 649 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe03g00916 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 660 672 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe03g00916 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 687 695 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe03g00916 944 MobiDBLite consensus disorder prediction 113 203 - -
Cpe03g00916 944 Pfam MCM P-loop domain 495 717 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe03g00916 944 MobiDBLite consensus disorder prediction 175 190 - -
Cpe03g00916 944 Gene3D - 328 453 IPR012340 -
Cpe03g00916 944 Gene3D - 487 861 IPR027417 -
Cpe03g00916 944 SMART mcm 324 839 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cpe03g00916 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 337 354 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cpe03g00916 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 360 372 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cpe03g00916 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 395 409 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cpe03g00916 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 456 467 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cpe03g00916 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 471 482 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cpe03g00916 944 MobiDBLite consensus disorder prediction 1 68 - -
Cpe03g00916 944 Pfam MCM AAA-lid domain 754 838 IPR041562 -
Cpe03g00916 944 ProSitePatterns MCM family signature. 616 624 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cpe03g00916 944 Pfam Mini-chromosome maintenance protein 2 44 199 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cpe03g00916 944 PANTHER DNA HELICASE 148 937 - -
Cpe03g00916 944 ProSiteProfiles MCM family domain profile. 507 713 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe03g00916 944 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 148 937 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cpe03g00916 944 Gene3D - 355 405 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00916 K02540 MCM2; DNA replication licensing factor MCM2 [EC:5.6.2.3] - csv:101219546 1729.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00916 Cpe-Chr3:5971105 Cpe08g00006 Cpe-Chr8:55997 0 dispersed
Cpe03g00916 Cpe-Chr3:5971105 Cpe04g00111 Cpe-Chr4:991728 3.60E-107 transposed
Cpe03g00916 Cpe-Chr3:5971105 Cpe15g00556 Cpe-Chr15:6397771 4.75E-107 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe06g01023 . 106 786 Core DNA Replication Machinery Family AT4G14700 65.0 4.4e-259 891.3
Cpe06g01023 . 73 786 Core DNA Replication Machinery Family AT4G12620 65.7 1.7e-271 932.6
Cpe07g00469 . 1 276 Core DNA Replication Machinery Family AT2G37560 68.1 2.7e-109 392.5
Cpe01g01014 . 9 410 Core DNA Replication Machinery Family AT2G01120 65.8 3.4e-154 542.0
Cpe12g00375 . 3 536 Core DNA Replication Machinery Family AT4G29910 56.9 1.6e-167 586.6
Cpe11g00701 . 1 226 Core DNA Replication Machinery Family AT1G26840 73.0 1.5e-89 326.6
Cpe08g00047 . 962 1793 Core DNA Replication Machinery Family AT1G79150 58.4 2.9e-242 835.5
Cpe15g00894 . 1 368 Core DNA Replication Machinery Family AT1G79150 52.6 2.1e-102 370.9
Cpe03g00916 . 9 939 Core DNA Replication Machinery Family AT1G44900 75.2 0.0e+00 1335.9
Cpe08g00006 . 1 966 Core DNA Replication Machinery Family AT1G44900 73.4 0.0e+00 1331.6
Cpe19g01129 CCT 65 636 Core DNA Replication Machinery Family AT5G46280 81.5 2.1e-268 921.8
Cpe04g00111 CST 1 845 Core DNA Replication Machinery Family AT2G16440 74.9 0.0e+00 1179.5
Cpe15g00556 CST 1 845 Core DNA Replication Machinery Family AT2G16440 76.9 0.0e+00 1159.4
Cpe07g01135 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1114.0
Cpe19g01218 . 7 818 Core DNA Replication Machinery Family AT5G44635 71.6 0.0e+00 1170.6
Cpe17g00747 . 11 722 Core DNA Replication Machinery Family AT4G02060 85.7 0.0e+00 1218.0
Cpe12g00890 . 8 678 Core DNA Replication Machinery Family AT4G02060 81.3 0.0e+00 1137.9
Cpe16g00653 . 30 518 Core DNA Replication Machinery Family AT2G29680 60.4 1.4e-162 570.1
Cpe16g00653 . 30 479 Core DNA Replication Machinery Family AT1G07270 58.1 2.0e-142 503.1
Cpe12g01089 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.6 5.2e-257 884.0
Cpe08g01122 . 37 715 Core DNA Replication Machinery Family AT3G09660 67.0 2.4e-278 955.3
Cpe15g00364 . 16 642 Core DNA Replication Machinery Family AT2G14050 78.4 2.3e-287 984.9
Cpe16g00316 . 1 437 Core DNA Replication Machinery Family AT2G20980 51.3 2.6e-111 399.4
Cpe06g00607 CCT 7 893 Core DNA Replication Machinery Family AT1G77320 50.1 5.9e-237 818.1
Cpe17g00581 . 1 200 Core DNA Replication Machinery Family AT1G80190 66.8 7.5e-75 277.3
Cpe19g00178 . 1 145 Core DNA Replication Machinery Family AT3G12530 73.1 1.2e-61 233.0
Cpe01g02514 . 8 177 Core DNA Replication Machinery Family AT1G19080 64.1 1.7e-57 219.5
Cpe01g02514 . 8 177 Core DNA Replication Machinery Family AT3G55490 64.1 1.7e-57 219.5
Cpe03g01740 . 15 164 Core DNA Replication Machinery Family AT5G49010 66.7 5.0e-52 201.4
Cpe05g01165 . 1 1529 Core DNA Replication Machinery Family AT5G67100 59.5 0.0e+00 1731.1
Cpe09g00571 . 2 625 Core DNA Replication Machinery Family AT1G67630 63.5 1.3e-223 773.1
Cpe17g01067 . 1 359 Core DNA Replication Machinery Family AT1G67320 53.3 1.8e-130 463.4
Cpe06g00974 . 1 483 Core DNA Replication Machinery Family AT5G41880 60.2 1.7e-172 602.8
Cpe19g00507 . 47 1084 Core DNA Replication Machinery Family AT5G63960 80.4 0.0e+00 1696.4
Cpe03g00370 . 15 431 Core DNA Replication Machinery Family AT2G42120 73.1 3.6e-191 664.8
Cpe17g01067 . 1 359 Core DNA Replication Machinery Family AT1G67320 53.3 1.8e-130 463.4
Cpe05g00419 . 1 2115 Core DNA Replication Machinery Family AT1G08260 70.1 0.0e+00 2947.9
Cpe05g00419 . 9 2221 Core DNA Replication Machinery Family AT2G27120 67.0 0.0e+00 2918.3
Cpe02g01094 . 7 502 Core DNA Replication Machinery Family AT5G22110 69.0 2.1e-195 679.1
Cpe05g00456 . 1 929 Core DNA Replication Machinery Family AT5G22010 62.6 3.9e-304 1041.2
Cpe14g00835 . 1 333 Core DNA Replication Machinery Family AT1G63160 89.5 3.8e-172 601.3
Cpe10g01069 . 11 275 Core DNA Replication Machinery Family AT5G27740 65.4 7.0e-92 334.7
Cpe02g00567 . 3 323 Core DNA Replication Machinery Family AT1G21690 80.7 3.3e-144 508.4
Cpe01g02062 . 1 363 Core DNA Replication Machinery Family AT1G77470 73.9 2.6e-150 528.9
Cpe13g00630 . 1 455 Core DNA Replication Machinery Family AT1G77470 62.9 2.3e-146 515.8
Cpe11g01184 . 34 626 Core DNA Replication Machinery Family AT2G06510 69.0 2.3e-252 868.6
Cpe11g01188 . 26 618 Core DNA Replication Machinery Family AT2G06510 69.0 2.3e-252 868.6
Cpe08g00899 . 30 697 Core DNA Replication Machinery Family AT2G06510 52.1 1.1e-201 700.3
Cpe14g01003 . 34 685 Core DNA Replication Machinery Family AT2G06510 52.6 1.0e-199 693.7
Cpe04g01458 . 1 622 Core DNA Replication Machinery Family AT5G08020 67.9 3.5e-245 844.7
Cpe08g00899 . 6 804 Core DNA Replication Machinery Family AT5G45400 51.7 7.0e-231 797.7
Cpe14g01003 . 10 784 Core DNA Replication Machinery Family AT5G45400 51.6 4.8e-224 775.0
Cpe04g01458 . 1 617 Core DNA Replication Machinery Family AT5G61000 65.6 6.7e-239 823.9
Cpe08g00899 . 1 818 Core DNA Replication Machinery Family AT4G19130 53.3 4.9e-231 798.1
Cpe14g01003 . 5 771 Core DNA Replication Machinery Family AT4G19130 54.8 8.7e-228 787.3
Cpe02g00418 . 1 252 Core DNA Replication Machinery Family AT2G24490 50.2 4.2e-68 255.4
Cpe04g00203 . 1 402 Core DNA Replication Machinery Family AT5G26680 80.7 5.5e-181 630.9
Cpe03g01241 . 1 297 Core DNA Replication Machinery Family AT2G25100 66.7 1.0e-114 410.2
Cpe16g00505 . 44 785 Core DNA Replication Machinery Family AT1G08130 66.3 5.4e-278 954.1
Cpe16g00505 . 204 785 Core DNA Replication Machinery Family AT1G49250 66.6 3.6e-227 785.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008086 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g00916 Cpe_Chr03 FPKM 0.235264 0.0 1.723033 1.58091 16.859468 14.648178 14.5043 0.0 0.153394 0.259182