Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00927 ATGGGGGCGATTTGGGCGGTTTCAATCGTGCAGACGCTGCTATTTTTGGCTTTCTTCCATTTGGCCGCTTCCTATACTGATTCCCGCGATGCTACAGTTCTTCGAGCTTTGAAAGATGATTGGCAAAATACACCACCAAGCTGGGGTGCATCAAATGATCCCTGTGGAGCCCCCTGGGAAGGAGTTCTTTGCAACAATTCAAGAGTCGTTGCATTGAGATTGTCGAGTATGGGCCTAAAAGGTAAACTTGGTGGTGACATTGGAGGCCTTACTGAACTTAAATCATTGGACCTTTCAGCGAATCGAGGCCTCATTGGTTCGATCTCCCGGGCGCTTGGGAGTTTGCTGAAATTGGATACCTTGAGCCTTTCTGCGTGTGGATTTAGTGGTACAATTCCGGAAGAACTAGGCAATCTTGCTGAGCTAACCTTCTTGTCTTTATATTCAAACAATTTCTCTGGAACCATACCGGCTACTCTAGGAAAACTCTCCAAACTCTACTGGCTAGACCTGGCAGATAATAAGTTGACTGGTCCTCTTCCAGTTTCCACTTCCGAATCTCCGGGTTTAGATCAACTTTCTGGGGCTAAACATTTTCATTTCAGCAAAAACAAGCTGTCAGGAGCCATTCCACCTGAACTTTTTAGCTCTGAGATGGAATTATTACACATATTATTTGACGGGAATAATTTTTCTGGGAGTATCCCACAAACATTAGGACTTGTTCAGTCCCTTGAGGTTCTTCGACTTGATCGAAATTCTTTAACAGGCAATGTCCCATCAACTCTGAGCAACCTAATTAATATCAATGCATTGCATTTGGCCAACAATAAGCTAACAGGTCCACTACCAAACTTTACTCAAATGAGTTCACTAAGTCACGTGGACCTTAGTAACAACTCATTTAACTCATCAGTAGCTCCGGAATGGTTCTCAACTCTACAATCTCTCACCACTCTTATTGTTGAATATGGGTCAATACGAGGAACGCTGCCAGAAGGAATCTTTATCTTACCACATATACAGCAAATAAAACTGAAGAACAATGCATTTGGTGGGACATTAATTATGGGTGACAGCATCAGCCAATCGTTGCAGCAAGTTGATTTGCAAAATAACGATATTTCCTCAGTTACCTCTTTTTCGGGATATACTAACACATTGATGCTGTGGGGAAATCCTGTGTGTAAAACTAGTGTCCTCTCAAATATGAACTATTGCCACCTTCAACAGCAACAAACAAAACCATATTCTACGAGCCTTGTCAATTGTGGTAGTAAGTCATGTCCTCCTGATGAGAAGCTGAACCCTCAGAGTTGTGAATGTGCCTATCCATATGAAGGGACCTTATACTTTAAAGGATCCTCTTTCCGGGAATTGTCCAATATAACTCTATTTCACTCATTGGAAACGAGCCTTTTTAAAACTTTCAACAGCACGCCTTTTATTCAAAGCCCTTTCGTTAATATTGATGATTATCTTCAGATACAACTTGCACTTTTTCCATCCCACGATAAGTATTTCAGTAGGGAAGACATCCAGAAGATTGGGTTTGAATTGTACCATCATAATTTCCAGCCTCCCGATATGTTTGGGCCATACACTTTCAATGCATCGCCTTATCATTTTCCAGCCATCAATGGGGGATCAGATTCAACGAACACCAGAATGGTAATTGGAATAGCTGTTGGCTCTGCCTTTCTTGTTCTATGCCTCATTGGAGTTGGAACATATGCAATTCAACAAAAGAGACGTGCAGAAAAGGCCCAGCCACATGGAAACGATAGTGGAGATGCGCCACAATTAAAGGGAGCCAGATGGTTTTCTTATGATGAACTTAAACAATGCACAAATAATTTCTCCACAAGTAACGTGATAGGATCCGGAGGATTTGGCATGGTATACAGAGGAACGCTGAAGGATGGAAAAGTAGTTGCAATCAAAAGAGCTCAACAAGGATCAATGCAGGGTGGCCTTGAGTTCAAGACAGAAATTGAGCTTCTTTCACGAGTTCATCACAAGAATCTTCTAGGCCTAGTGGGATTTTGTTCCGAACAAGGAGAACAGATTCTTGTTTATGAATTCATGCCTAATGGGACACTTAGAGAGAGCCTATCTGGTAAGTTTCCTCGACTCTTTTGGGCTGTCTATCTCATTTATGTCAAAAAGAAAGTGGGTTATTTGGATCCTGAATATTACATGAGTGAACAATTGACTGAGAAAAGTGATGTATACAGCTTTGGAATAGTTATGTTGGAATTGATAACTGCTAAGCTGCCAATTGAGAAAGGAAAGCACATAGTTCGTGAGGTGCGTACGTTGATGAATAAGAGTGATGAAGAATATTATGGTTTGAAGGATATAATGGATAAATCCATCATCGTTAATACAACAAATCTTATTGGGTTCGGAAGGTTCTTAGAGTTGGGGATGCAATGTGTTGAAGAGGCAGCTGCTGAGCGTCCCACAATGAGTGATGTGGTCAAGGCAATTGAGAGCATTTTGCAGAATGATGGAATCAATACAAGCTCAACCTCAGCATCCTCATCCGCCACGGACTTTGGGGCTTCCAAAGTTGCTTCCAGACATCCTTATAATGATGCTATACTCAAAGAGGGTGTCAACACCCAATGA 2634 41.72 MGAIWAVSIVQTLLFLAFFHLAASYTDSRDATVLRALKDDWQNTPPSWGASNDPCGAPWEGVLCNNSRVVALRLSSMGLKGKLGGDIGGLTELKSLDLSANRGLIGSISRALGSLLKLDTLSLSACGFSGTIPEELGNLAELTFLSLYSNNFSGTIPATLGKLSKLYWLDLADNKLTGPLPVSTSESPGLDQLSGAKHFHFSKNKLSGAIPPELFSSEMELLHILFDGNNFSGSIPQTLGLVQSLEVLRLDRNSLTGNVPSTLSNLININALHLANNKLTGPLPNFTQMSSLSHVDLSNNSFNSSVAPEWFSTLQSLTTLIVEYGSIRGTLPEGIFILPHIQQIKLKNNAFGGTLIMGDSISQSLQQVDLQNNDISSVTSFSGYTNTLMLWGNPVCKTSVLSNMNYCHLQQQQTKPYSTSLVNCGSKSCPPDEKLNPQSCECAYPYEGTLYFKGSSFRELSNITLFHSLETSLFKTFNSTPFIQSPFVNIDDYLQIQLALFPSHDKYFSREDIQKIGFELYHHNFQPPDMFGPYTFNASPYHFPAINGGSDSTNTRMVIGIAVGSAFLVLCLIGVGTYAIQQKRRAEKAQPHGNDSGDAPQLKGARWFSYDELKQCTNNFSTSNVIGSGGFGMVYRGTLKDGKVVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLLGLVGFCSEQGEQILVYEFMPNGTLRESLSGKFPRLFWAVYLIYVKKKVGYLDPEYYMSEQLTEKSDVYSFGIVMLELITAKLPIEKGKHIVREVRTLMNKSDEEYYGLKDIMDKSIIVNTTNLIGFGRFLELGMQCVEEAAAERPTMSDVVKAIESILQNDGINTSSTSASSSATDFGASKVASRHPYNDAILKEGVNTQ 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6325143 6331489 - Cp4.1LG03g09280.1 Cpe03g00927 466644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00927 877 ProSitePatterns Protein kinases ATP-binding region signature. 626 648 IPR017441 GO:0005524
Cpe03g00927 877 Gene3D Ribonuclease Inhibitor 28 184 IPR032675 -
Cpe03g00927 877 ProSiteProfiles Leucine-rich repeat profile. 364 385 IPR001611 GO:0005515
Cpe03g00927 877 PANTHER LRR RECEPTOR-LIKE KINASE 9 709 - -
Cpe03g00927 877 PANTHER LRR RECEPTOR-LIKE KINASE 721 864 - -
Cpe03g00927 877 SUPERFAMILY Protein kinase-like (PK-like) 597 837 IPR011009 -
Cpe03g00927 877 ProSiteProfiles Protein kinase domain profile. 620 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g00927 877 Gene3D Phosphorylase Kinase; domain 1 592 695 - -
Cpe03g00927 877 Pfam Protein tyrosine and serine/threonine kinase 622 707 IPR001245 GO:0004672|GO:0006468
Cpe03g00927 877 Pfam Protein tyrosine and serine/threonine kinase 724 829 IPR001245 GO:0004672|GO:0006468
Cpe03g00927 877 Gene3D Transferase(Phosphotransferase) domain 1 696 860 - -
Cpe03g00927 877 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Cpe03g00927 877 SUPERFAMILY L domain-like 53 408 - -
Cpe03g00927 877 Gene3D Ribonuclease Inhibitor 185 286 IPR032675 -
Cpe03g00927 877 Gene3D Ribonuclease Inhibitor 287 433 IPR032675 -
Cpe03g00927 877 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 9 709 - -
Cpe03g00927 877 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 721 864 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00927 Cpe-Chr3:6325143 Cpe08g01270 Cpe-Chr8:9167132 1.05E-14 dispersed
Cpe03g00927 Cpe-Chr3:6325143 Cpe03g00001 Cpe-Chr3:21 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62290 PF07714 PK_Tyr_Ser-Thr 1.70E-06 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00927 - - bhj:120091485 1192.95