Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00938 ATGAACGATCTTCTTTCGGATTCCTTTGAGATCCCTCGGGGTCAGCCTTCTAGAGGAGGAGACATTGAGCTTGGAACAAATGCTCCTACAAGTGCAGGAGATCTGGGGTTGGATGATTTCTTTAAAAAGGTCCAAGATATTGAAAAACAGAATGAGAAGCTGGACAGGTTATTGCGAAAACTCCAGGATTCACACGAGGAGTCCAAAGCTGTGACTAAAGCTCCAGCAATGAAAGCAATCAAGCAGCGAATGGAAAAGGATGTTGATGAAGTTGGAAAAGTTGCACGTTTTGTGAAGAGCAAGGTCGAAGAACTTGACAAGGAGAATCTGGCAAATAGGCAGAAGCCTGGATGTGGTAAAGGATCAGGTGTAGATAGATCAAGAACAGCAACTACTCTTGCCTTAAAAAAGAAGTTGAAAGACAAGATGACTGAGTTCCAGATTTTGCGGGAAAAAGTTCATCAAGAGTATCGGGAGGTTGTTGAGAGACGGGTTTTCACAGTCACGGGCGCTAGGGCTGACGAAGAGACCATCGAGAAATTAATCGAAACTGGGGATAGCGAACAAATTTTTCAGAAGGCAATTCAAGAACAAGGGCGAGGACAGGTAATGGACACTCTAGCTGAAATTCAAGAGCGTCACAGCGCAGTTAGAGAACTGGAGAGGAAGTTACTCGAGCTACAGCAGGTATTTCTGGACATGGCTGTTTTGGTAGATGCACAGGGGGATATGCTCGACAATATCGAATCACATGTTACAAGTGCAGTAGATCATGTGCAACAAGGGAACACTGCACTTCAAAAGGCAAAGAAGCTTCAAAAGAATTCAAGGAAATGGATGTGCATTGCCATAATAATCCTTCTAATCATTGTTGTGGTGGTAGTAGTGGGAGTCCTAAAGCCATGGAATAGTGGTAAGGGTGCGTAA 927 44.01 MNDLLSDSFEIPRGQPSRGGDIELGTNAPTSAGDLGLDDFFKKVQDIEKQNEKLDRLLRKLQDSHEESKAVTKAPAMKAIKQRMEKDVDEVGKVARFVKSKVEELDKENLANRQKPGCGKGSGVDRSRTATTLALKKKLKDKMTEFQILREKVHQEYREVVERRVFTVTGARADEETIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIQERHSAVRELERKLLELQQVFLDMAVLVDAQGDMLDNIESHVTSAVDHVQQGNTALQKAKKLQKNSRKWMCIAIIILLIIVVVVVVGVLKPWNSGKGA 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6854115 6870619 + Cp4.1LG03g09390.1 Cpe03g00938 466655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00938 308 MobiDBLite consensus disorder prediction 1 35 - -
Cpe03g00938 308 Coils Coil 210 230 - -
Cpe03g00938 308 ProSitePatterns Syntaxin / epimorphin family signature. 213 252 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cpe03g00938 308 CDD SNARE_syntaxin1-like 206 268 - -
Cpe03g00938 308 Pfam Syntaxin 39 242 IPR006011 GO:0016020
Cpe03g00938 308 CDD SynN 37 194 IPR006011 GO:0016020
Cpe03g00938 308 SMART tSNARE_6 202 269 IPR000727 -
Cpe03g00938 308 SMART SynN_4 32 158 IPR006011 GO:0016020
Cpe03g00938 308 Gene3D - 197 300 - -
Cpe03g00938 308 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
Cpe03g00938 308 PANTHER SYNTAXIN 3 299 IPR045242 -
Cpe03g00938 308 PANTHER - 3 299 - -
Cpe03g00938 308 Pfam SNARE domain 243 295 IPR000727 -
Cpe03g00938 308 Gene3D - 34 161 - -
Cpe03g00938 308 Coils Coil 37 71 - -
Cpe03g00938 308 SUPERFAMILY t-snare proteins 35 262 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00938 Cpe-Chr3:6854115 Cpe19g00503 Cpe-Chr19:4303812 6.46E-93 dispersed
Cpe03g00938 Cpe-Chr3:6854115 Cpe20g00409 Cpe-Chr20:2339171 1.59E-94 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00938 K08486 - csv:101203075 512.686