Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00951 ATGGCTTCTTCCTTCAACTTTGTGTTCCTTTGGTTGAGTTTTGCAGCCTTTTTGGCAGACCCCATAGCATGTAGGCTCCTTGATCCCATTGGTATCCAAAACATCAACGGTGCATGGCGCAATGCTCATGCCACCTTCTACGGTGACATGGGGGGTGGCGAAACTATGCAGGGAGCTTGCGGGTATGGAAACCTACACGATCAAGGTTACGGGCTAGAGACGGCGGCAATAAGCACAGCACTTTTCAACAACGGTCTAACCTGTGGAGCATGCTTCGAGTTAAAGTGTCAGCCCGGAGGGCACTATTCGTGCCTACCAAACTCGGGCACAATCAAAATAACCGCCACAAACTTCTGCCCACCAAACTACACGAAAACAGTAGACATTTGGTGCAATCCACCCCAAGAGCACTTCGACCTTTCTCTCTACATGTTTACTAAAATCGCCCCTTATCGTGCTGGTGTCATCAATGTTAGCTATCGTAGGGTACTTTGCCAGAAACAAGGTGGCGTCCGGTTCCAATTAAATGGGAACCCATATTGGCTAATCGTCCTACCCTTTAATGTTGGAGGTGCTGGTGATGTTGTTGGTGTTAACATTAAAGGCTCTTCTACTGGGTGGCTTAAGATGTCAAAGAACTGGGGCCAAAATTGGGAGACGGGTACCGTTTTTGTGGGCCAGAGCCTGTCCTTTCAAGTCACTACCAGTGATTCGAGGACACTTCAATTTGATAATGTGGTGCCTAGCTCTTGGCAGTTCGGCCAAACCTTTGAAGGGAAGCGGAATTTCTAA 792 48.23 MASSFNFVFLWLSFAAFLADPIACRLLDPIGIQNINGAWRNAHATFYGDMGGGETMQGACGYGNLHDQGYGLETAAISTALFNNGLTCGACFELKCQPGGHYSCLPNSGTIKITATNFCPPNYTKTVDIWCNPPQEHFDLSLYMFTKIAPYRAGVINVSYRRVLCQKQGGVRFQLNGNPYWLIVLPFNVGGAGDVVGVNIKGSSTGWLKMSKNWGQNWETGTVFVGQSLSFQVTTSDSRTLQFDNVVPSSWQFGQTFEGKRNF 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7163209 7164094 + Cp4.1LG03g09500.1 Cpe03g00951 466668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00951 263 Pfam Lytic transglycolase 74 160 IPR009009 -
Cpe03g00951 263 PANTHER EXPANSIN-A15 37 263 IPR002963 GO:0009664
Cpe03g00951 263 Gene3D - 168 263 IPR036749 -
Cpe03g00951 263 Pfam Expansin C-terminal domain 171 248 IPR007117 -
Cpe03g00951 263 Gene3D - 31 166 IPR036908 -
Cpe03g00951 263 PRINTS Expansin signature 69 83 IPR002963 GO:0009664
Cpe03g00951 263 PRINTS Expansin signature 111 121 IPR002963 GO:0009664
Cpe03g00951 263 PRINTS Expansin signature 128 145 IPR002963 GO:0009664
Cpe03g00951 263 PRINTS Expansin signature 145 158 IPR002963 GO:0009664
Cpe03g00951 263 PRINTS Expansin signature 169 181 IPR002963 GO:0009664
Cpe03g00951 263 PRINTS Expansin signature 181 202 IPR002963 GO:0009664
Cpe03g00951 263 PRINTS Expansin signature 216 237 IPR002963 GO:0009664
Cpe03g00951 263 PRINTS Expansin signature 245 261 IPR002963 GO:0009664
Cpe03g00951 263 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576
Cpe03g00951 263 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Cpe03g00951 263 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576
Cpe03g00951 263 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576
Cpe03g00951 263 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576
Cpe03g00951 263 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576
Cpe03g00951 263 PANTHER EXPANSIN-A21-RELATED 37 263 - -
Cpe03g00951 263 SMART dpbb_1 74 160 IPR007112 -
Cpe03g00951 263 SUPERFAMILY Barwin-like endoglucanases 10 188 IPR036908 -
Cpe03g00951 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 170 IPR007112 -
Cpe03g00951 263 SUPERFAMILY PHL pollen allergen 167 259 IPR036749 -
Cpe03g00951 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 259 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00951 Cpe-Chr3:7163209 Cpe05g00925 Cpe-Chr5:6080077 3.42E-96 dispersed
Cpe03g00951 Cpe-Chr3:7163209 Cpe03g00952 Cpe-Chr3:7193797 1.69E-31 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00951 - - cmos:111436984 516.153