Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00969 ATGGGAAGAGGCAGAGTTCAGCTGAAGAGAATAGAGAACAAAATCAGCCGCCAAGTCACCTTCTCAAAGCGTAGAGCTGGTTTGCTCAAAAAGGCCCATGAGATCTCTGTTCTTTGTGATGCAGATGTTGCTTTGATCGTCTTCTCCACCAAAGGCAAGCTCTTTGAGTACTCCTCTCATTCCAGCATGGAGAAAATCTTAGAAAAATATGAAAGATATTCTTATGCTGAGAGACCATTGGCCCCAAATTCAGATTCCGAATCACAGGCAAGTTGGTGTCAGGAGTATCCAAAGCTTGCAGCCAGATTGGAGATTGTGCAGAAGAATTTAAGGCATTATTTGGGAGAAGAGCTTGACCCTTTGAATTTGAGAGAACTTCAAAGCTTGGAACAACAACTTGATTCATCACTCAAGCGCATAAGAGCCAGAAAGAACCAACTAATGCAAGAATCCATTTCAAAGCTACACAAAAAGGTAAAAGAGAATGAGACGGTTTGGGTTGAACGTGGACACTGCGAGCTCACAAATTTGGATCATAATCACCACATTTTAGCAACGCCACCACCACTTCCTTCTTTGTCAATTGGAGTAAACTGCCATGGGAGAGGATCAGATGAAGATGAAACAAGGCCAACAAGCACCAACAACATCCAAATACCAGCATGGATGCTTAGCCATGTGACTGAAAACCCTCATAATTAA 702 42.59 MGRGRVQLKRIENKISRQVTFSKRRAGLLKKAHEISVLCDADVALIVFSTKGKLFEYSSHSSMEKILEKYERYSYAERPLAPNSDSESQASWCQEYPKLAARLEIVQKNLRHYLGEELDPLNLRELQSLEQQLDSSLKRIRARKNQLMQESISKLHKKVKENETVWVERGHCELTNLDHNHHILATPPPLPSLSIGVNCHGRGSDEDETRPTSTNNIQIPAWMLSHVTENPHN 233
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 7585925 7590200 - Cp4.1LG03g15390.1 Cpe03g00969 466686
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00969 233 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cpe03g00969 233 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe03g00969 233 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cpe03g00969 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cpe03g00969 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 206 - -
Cpe03g00969 233 PANTHER BNAA09G02740D PROTEIN 1 206 - -
Cpe03g00969 233 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cpe03g00969 233 Coils Coil 123 150 - -
Cpe03g00969 233 Pfam K-box region 85 162 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe03g00969 233 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cpe03g00969 233 ProSiteProfiles K-box domain profile. 89 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe03g00969 233 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Cpe03g00969 233 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cpe03g00969 233 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Cpe03g00969 233 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cpe02g01396 Cpe03g00969 CCT
Cpe02g01396 Cpe03g00969 ECH
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00969 Cpe-Chr3:7585925 Cpe09g01156 Cpe-Chr9:9836724 6.27E-84 dispersed
Cpe09g00188 Cpe-Chr9:1085213 Cpe03g00969 Cpe-Chr3:7585925 7.42E-16 dispersed
Cpe14g00135 Cpe-Chr14:725287 Cpe03g00969 Cpe-Chr3:7585925 8.40E-06 dispersed
Cpe19g01204 Cpe-Chr19:8098204 Cpe03g00969 Cpe-Chr3:7585925 1.97E-39 dispersed
Cpe03g00969 Cpe-Chr3:7585925 Cpe03g00970 Cpe-Chr3:7616271 3.70E-53 tandem
Cpe02g01396 Cpe-Chr2:12203422 Cpe03g00969 Cpe-Chr3:7585925 1.23E-104 wgd
Cpe20g00089 Cpe-Chr20:477882 Cpe03g00969 Cpe-Chr3:7585925 1.41E-81 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49222 PF01486 K-box 1.10E-24 No_clan Cpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00969 K09264 - csv:101218674 366.311