Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe03g00969 | ATGGGAAGAGGCAGAGTTCAGCTGAAGAGAATAGAGAACAAAATCAGCCGCCAAGTCACCTTCTCAAAGCGTAGAGCTGGTTTGCTCAAAAAGGCCCATGAGATCTCTGTTCTTTGTGATGCAGATGTTGCTTTGATCGTCTTCTCCACCAAAGGCAAGCTCTTTGAGTACTCCTCTCATTCCAGCATGGAGAAAATCTTAGAAAAATATGAAAGATATTCTTATGCTGAGAGACCATTGGCCCCAAATTCAGATTCCGAATCACAGGCAAGTTGGTGTCAGGAGTATCCAAAGCTTGCAGCCAGATTGGAGATTGTGCAGAAGAATTTAAGGCATTATTTGGGAGAAGAGCTTGACCCTTTGAATTTGAGAGAACTTCAAAGCTTGGAACAACAACTTGATTCATCACTCAAGCGCATAAGAGCCAGAAAGAACCAACTAATGCAAGAATCCATTTCAAAGCTACACAAAAAGGTAAAAGAGAATGAGACGGTTTGGGTTGAACGTGGACACTGCGAGCTCACAAATTTGGATCATAATCACCACATTTTAGCAACGCCACCACCACTTCCTTCTTTGTCAATTGGAGTAAACTGCCATGGGAGAGGATCAGATGAAGATGAAACAAGGCCAACAAGCACCAACAACATCCAAATACCAGCATGGATGCTTAGCCATGTGACTGAAAACCCTCATAATTAA | 702 | 42.59 | MGRGRVQLKRIENKISRQVTFSKRRAGLLKKAHEISVLCDADVALIVFSTKGKLFEYSSHSSMEKILEKYERYSYAERPLAPNSDSESQASWCQEYPKLAARLEIVQKNLRHYLGEELDPLNLRELQSLEQQLDSSLKRIRARKNQLMQESISKLHKKVKENETVWVERGHCELTNLDHNHHILATPPPLPSLSIGVNCHGRGSDEDETRPTSTNNIQIPAWMLSHVTENPHN | 233 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 7585925 | 7590200 | - | Cp4.1LG03g15390.1 | Cpe03g00969 | 466686 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe03g00969 | 233 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe03g00969 | 233 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe03g00969 | 233 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe03g00969 | 233 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe03g00969 | 233 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 206 | - | - | |
Cpe03g00969 | 233 | PANTHER | BNAA09G02740D PROTEIN | 1 | 206 | - | - | |
Cpe03g00969 | 233 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977|GO:0045944 | |
Cpe03g00969 | 233 | Coils | Coil | 123 | 150 | - | - | |
Cpe03g00969 | 233 | Pfam | K-box region | 85 | 162 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cpe03g00969 | 233 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe03g00969 | 233 | ProSiteProfiles | K-box domain profile. | 89 | 183 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cpe03g00969 | 233 | Gene3D | - | 13 | 85 | IPR036879 | GO:0003677|GO:0046983 | |
Cpe03g00969 | 233 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe03g00969 | 233 | SUPERFAMILY | SRF-like | 2 | 81 | IPR036879 | GO:0003677|GO:0046983 | |
Cpe03g00969 | 233 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe02g01396 | Cpe03g00969 | CCT | |
Cpe02g01396 | Cpe03g00969 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g00969 | Cpe-Chr3:7585925 | Cpe09g01156 | Cpe-Chr9:9836724 | 6.27E-84 | dispersed | |
Cpe09g00188 | Cpe-Chr9:1085213 | Cpe03g00969 | Cpe-Chr3:7585925 | 7.42E-16 | dispersed | |
Cpe14g00135 | Cpe-Chr14:725287 | Cpe03g00969 | Cpe-Chr3:7585925 | 8.40E-06 | dispersed | |
Cpe19g01204 | Cpe-Chr19:8098204 | Cpe03g00969 | Cpe-Chr3:7585925 | 1.97E-39 | dispersed | |
Cpe03g00969 | Cpe-Chr3:7585925 | Cpe03g00970 | Cpe-Chr3:7616271 | 3.70E-53 | tandem | |
Cpe02g01396 | Cpe-Chr2:12203422 | Cpe03g00969 | Cpe-Chr3:7585925 | 1.23E-104 | wgd | |
Cpe20g00089 | Cpe-Chr20:477882 | Cpe03g00969 | Cpe-Chr3:7585925 | 1.41E-81 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49222 | PF01486 | K-box | 1.10E-24 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe03g00969 | K09264 | - | csv:101218674 | 366.311 |