Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe03g00970 | ATGAAACTAGAAACAAGAAGAAGAGTCCTAAGGGGCACACTTGGAGGAGGGTACCAACAGAGGAAACAAGGAAGAAGAAAGGAAATGGGAAGAGGAAGAGTGGAGCTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACATTTGCAAAGAGAAGAAATGGGCTTTTGAAGAAGGCTTATGAGCTGTCTGTTCTTTGTGATGCCGAGGTTGCTCTTATCATCTTCTCCAATCGTGGCAAGCTCTATGAGTTCTGCAGCACTTCCAACATGCTCAAAACCCTTGAGAGGTACCAGAAATGCAGCTATGGAGCTGTGGAGGTCGCCAAACCTGCCAAAGAACTCGAGAGTAGCTATAGAGAATACTTGAAGCTCAAGGCTAGGTTTGAGTCTCTTCAAACAACTCAGCGAAATCTTCTTGGTGAGGACTTGGGTCCATTGAACTCAAAAGAGCTTGAGCAGCTGGAGCGTCAGCTGGAGTCTTCTTTGAAGCAAGTTAGGTCCACTAAGACTCAGTACATGCTGGACCAGCTATCTGATCTACAGAACAAGGAACAAATGCTGATTGAAACCAACAGAGCTCTGCAGATCAAGACTCAGTACATGCTGGACCAGCTATCTGATCTACAGAACAAGGAACAAATGCTGATTGAAACCAACAGAGCTCTGCAGATCAAGTTGGAAGAAATAAGTTCAAGAAATAACATAAGGCTAACATGGGAAGCTGGAGACCAAAGCATGTCATATGCTCCACAAGATGCCCAAACTCAAGGCTTCTTTCAGGCACTGGATTGCAATCCCACTTTGCAAATTGGGTACACTTCTGCAGTGTCGGACCAAATTACAGCCACCACTGCCCCAACTCATGCCCAACAAGTCAATGGCTTCCTCCCTGGTTGGATGCTTTGA | 909 | 45.54 | MKLETRRRVLRGTLGGGYQQRKQGRRKEMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMLKTLERYQKCSYGAVEVAKPAKELESSYREYLKLKARFESLQTTQRNLLGEDLGPLNSKELEQLERQLESSLKQVRSTKTQYMLDQLSDLQNKEQMLIETNRALQIKTQYMLDQLSDLQNKEQMLIETNRALQIKLEEISSRNNIRLTWEAGDQSMSYAPQDAQTQGFFQALDCNPTLQIGYTSAVSDQITATTAPTHAQQVNGFLPGWML | 302 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 7616271 | 7622243 | - | Cp4.1LG03g15410.1 | Cpe03g00970 | 466687 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe03g00970 | 302 | Gene3D | - | 41 | 111 | IPR036879 | GO:0003677|GO:0046983 | |
Cpe03g00970 | 302 | Coils | Coil | 206 | 226 | - | - | |
Cpe03g00970 | 302 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 38 | 85 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe03g00970 | 302 | Coils | Coil | 178 | 198 | - | - | |
Cpe03g00970 | 302 | ProSiteProfiles | MADS-box domain profile. | 29 | 89 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe03g00970 | 302 | Pfam | K-box region | 113 | 198 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cpe03g00970 | 302 | SUPERFAMILY | SRF-like | 30 | 104 | IPR036879 | GO:0003677|GO:0046983 | |
Cpe03g00970 | 302 | ProSitePatterns | MADS-box domain signature. | 31 | 85 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe03g00970 | 302 | CDD | MADS_MEF2_like | 30 | 104 | IPR033896 | GO:0000977|GO:0045944 | |
Cpe03g00970 | 302 | SMART | madsneu2 | 29 | 88 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe03g00970 | 302 | PRINTS | MADS domain signature | 66 | 87 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe03g00970 | 302 | PRINTS | MADS domain signature | 51 | 66 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe03g00970 | 302 | PRINTS | MADS domain signature | 31 | 51 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe03g00970 | 302 | Coils | Coil | 149 | 172 | - | - | |
Cpe03g00970 | 302 | PANTHER | DEVELOPMENTAL PROTEIN SEPALLATA 1 | 29 | 198 | - | - | |
Cpe03g00970 | 302 | PANTHER | DEVELOPMENTAL PROTEIN SEPALLATA 1 | 197 | 287 | - | - | |
Cpe03g00970 | 302 | ProSiteProfiles | K-box domain profile. | 115 | 209 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cpe03g00970 | 302 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 29 | 198 | - | - | |
Cpe03g00970 | 302 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 197 | 287 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe02g01397 | Cpe03g00970 | CCT | |
Cpe02g01397 | Cpe03g00970 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe02g01397 | Cpe-Chr2:12211748 | Cpe03g00970 | Cpe-Chr3:7616271 | 1.90E-166 | dispersed | |
Cpe03g00970 | Cpe-Chr3:7616271 | Cpe17g01070 | Cpe-Chr17:8101437 | 1.30E-104 | dispersed | |
Cpe03g00969 | Cpe-Chr3:7585925 | Cpe03g00970 | Cpe-Chr3:7616271 | 3.70E-53 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49223 | PF01486 | K-box | 2.80E-26 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe03g00970 | K09264 | - | csv:101208204 | 442.195 |