Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00970 ATGAAACTAGAAACAAGAAGAAGAGTCCTAAGGGGCACACTTGGAGGAGGGTACCAACAGAGGAAACAAGGAAGAAGAAAGGAAATGGGAAGAGGAAGAGTGGAGCTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACATTTGCAAAGAGAAGAAATGGGCTTTTGAAGAAGGCTTATGAGCTGTCTGTTCTTTGTGATGCCGAGGTTGCTCTTATCATCTTCTCCAATCGTGGCAAGCTCTATGAGTTCTGCAGCACTTCCAACATGCTCAAAACCCTTGAGAGGTACCAGAAATGCAGCTATGGAGCTGTGGAGGTCGCCAAACCTGCCAAAGAACTCGAGAGTAGCTATAGAGAATACTTGAAGCTCAAGGCTAGGTTTGAGTCTCTTCAAACAACTCAGCGAAATCTTCTTGGTGAGGACTTGGGTCCATTGAACTCAAAAGAGCTTGAGCAGCTGGAGCGTCAGCTGGAGTCTTCTTTGAAGCAAGTTAGGTCCACTAAGACTCAGTACATGCTGGACCAGCTATCTGATCTACAGAACAAGGAACAAATGCTGATTGAAACCAACAGAGCTCTGCAGATCAAGACTCAGTACATGCTGGACCAGCTATCTGATCTACAGAACAAGGAACAAATGCTGATTGAAACCAACAGAGCTCTGCAGATCAAGTTGGAAGAAATAAGTTCAAGAAATAACATAAGGCTAACATGGGAAGCTGGAGACCAAAGCATGTCATATGCTCCACAAGATGCCCAAACTCAAGGCTTCTTTCAGGCACTGGATTGCAATCCCACTTTGCAAATTGGGTACACTTCTGCAGTGTCGGACCAAATTACAGCCACCACTGCCCCAACTCATGCCCAACAAGTCAATGGCTTCCTCCCTGGTTGGATGCTTTGA 909 45.54 MKLETRRRVLRGTLGGGYQQRKQGRRKEMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMLKTLERYQKCSYGAVEVAKPAKELESSYREYLKLKARFESLQTTQRNLLGEDLGPLNSKELEQLERQLESSLKQVRSTKTQYMLDQLSDLQNKEQMLIETNRALQIKTQYMLDQLSDLQNKEQMLIETNRALQIKLEEISSRNNIRLTWEAGDQSMSYAPQDAQTQGFFQALDCNPTLQIGYTSAVSDQITATTAPTHAQQVNGFLPGWML 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7616271 7622243 - Cp4.1LG03g15410.1 Cpe03g00970 466687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00970 302 Gene3D - 41 111 IPR036879 GO:0003677|GO:0046983
Cpe03g00970 302 Coils Coil 206 226 - -
Cpe03g00970 302 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 38 85 IPR002100 GO:0003677|GO:0046983
Cpe03g00970 302 Coils Coil 178 198 - -
Cpe03g00970 302 ProSiteProfiles MADS-box domain profile. 29 89 IPR002100 GO:0003677|GO:0046983
Cpe03g00970 302 Pfam K-box region 113 198 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe03g00970 302 SUPERFAMILY SRF-like 30 104 IPR036879 GO:0003677|GO:0046983
Cpe03g00970 302 ProSitePatterns MADS-box domain signature. 31 85 IPR002100 GO:0003677|GO:0046983
Cpe03g00970 302 CDD MADS_MEF2_like 30 104 IPR033896 GO:0000977|GO:0045944
Cpe03g00970 302 SMART madsneu2 29 88 IPR002100 GO:0003677|GO:0046983
Cpe03g00970 302 PRINTS MADS domain signature 66 87 IPR002100 GO:0003677|GO:0046983
Cpe03g00970 302 PRINTS MADS domain signature 51 66 IPR002100 GO:0003677|GO:0046983
Cpe03g00970 302 PRINTS MADS domain signature 31 51 IPR002100 GO:0003677|GO:0046983
Cpe03g00970 302 Coils Coil 149 172 - -
Cpe03g00970 302 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 29 198 - -
Cpe03g00970 302 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 197 287 - -
Cpe03g00970 302 ProSiteProfiles K-box domain profile. 115 209 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe03g00970 302 PANTHER SERUM RESPONSE FACTOR HOMOLOG 29 198 - -
Cpe03g00970 302 PANTHER SERUM RESPONSE FACTOR HOMOLOG 197 287 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g01397 Cpe03g00970 CCT
Cpe02g01397 Cpe03g00970 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01397 Cpe-Chr2:12211748 Cpe03g00970 Cpe-Chr3:7616271 1.90E-166 dispersed
Cpe03g00970 Cpe-Chr3:7616271 Cpe17g01070 Cpe-Chr17:8101437 1.30E-104 dispersed
Cpe03g00969 Cpe-Chr3:7585925 Cpe03g00970 Cpe-Chr3:7616271 3.70E-53 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49223 PF01486 K-box 2.80E-26 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00970 K09264 - csv:101208204 442.195