Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe03g00977 | ATGCGTAATGCTAATGAATTGCAAAAAAAATGTACAAATTATATAGCTGCAGGCAAACATGATGAGAGACATACTATGATTACAAATTCTAAAGAAGAGAATTCCCCTCCAAAACTAGCAGCTTCATCAAGCTCATCGGCGGCGGTGGCAACGCCATGGCTTAGGTTGAAGGATCCGAGGATCGTGCGCGTGTCGCGAGCTTTCGGAGGCAAGGATCGACATAGCAAAGTTTGTACCATAAGAGGGCTGCGCGACAGGCGTGTAAGGCTTTCGGTTTCGACTGCAATTCAGCTCTATGATCTTCAGGACCGCCTCGGCCTTAATCAGCCAAGCAAGGTCGTCGACTGGCTGCTCAACGTCGCCAAGGATGAAATCGACGAACTCCCTCCATTGCCAATACCATCTGCAAGCCTCGGCCTTCACTACCAATCTATGCTACCACCTCATATAGCACATAGATCGGAGTTCAAAATCAACTCCGGCATCGACAAGGTCGAAATCGACGACGACGACGATGACGAACAAAAGCAACACAAATCCAATTCTAATCCTTCTTCCTTCTCAGCCCTTTTGAACAATGTGTCTGCCCCTCCATTTGGGTTCCATTGGGATCCCTCGTTGTCGTCGTCGTCGTCGTCGTCAACAACAAATCTTCCGTTCTTTACATCTCAAGCTGAGGATCTTCATAACTTCAATCATGTCACCCCTTTGTCACTCTCAACTGGCTCTCAGTTCTTGGAGTTCAATAATCACTTGCACCAAAATTTCTTCATTAACAACTCTTTGAATACACCTCCTCCTATGCACTCAATAACCCACCCCGCTGTTAGGCCTTTTCATTTCAGCATGGCTACCAAATTTGTTGCTCAACATAAGAATAACAATGGAGATCCTGCAAATAAAGAGGACGGCTTCGGTTCTGATGAATGA | 930 | 46.13 | MRNANELQKKCTNYIAAGKHDERHTMITNSKEENSPPKLAASSSSSAAVATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNVAKDEIDELPPLPIPSASLGLHYQSMLPPHIAHRSEFKINSGIDKVEIDDDDDDEQKQHKSNSNPSSFSALLNNVSAPPFGFHWDPSLSSSSSSSTTNLPFFTSQAEDLHNFNHVTPLSLSTGSQFLEFNNHLHQNFFINNSLNTPPPMHSITHPAVRPFHFSMATKFVAQHKNNNGDPANKEDGFGSDE | 309 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 7885521 | 7887075 | + | Cp4.1LG03g15300.1 | Cpe03g00977 | 466694 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe03g00977 | 309 | PANTHER | TRANSCRIPTION FACTOR TCP2-LIKE | 26 | 175 | - | - | |
Cpe03g00977 | 309 | MobiDBLite | consensus disorder prediction | 22 | 44 | - | - | |
Cpe03g00977 | 309 | MobiDBLite | consensus disorder prediction | 166 | 187 | - | - | |
Cpe03g00977 | 309 | Pfam | TCP family transcription factor | 70 | 171 | IPR017887 | - | |
Cpe03g00977 | 309 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 26 | 175 | IPR005333 | GO:0003700 | |
Cpe03g00977 | 309 | MobiDBLite | consensus disorder prediction | 30 | 44 | - | - | |
Cpe03g00977 | 309 | ProSiteProfiles | TCP domain profile. | 70 | 128 | IPR017887 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g00977 | Cpe-Chr3:7885521 | Cpe18g00710 | Cpe-Chr18:7003353 | 2.37E-44 | dispersed | |
Cpe09g00751 | Cpe-Chr9:6997893 | Cpe03g00977 | Cpe-Chr3:7885521 | 1.25E-28 | dispersed | |
Cpe02g01404 | Cpe-Chr2:12257575 | Cpe03g00977 | Cpe-Chr3:7885521 | 3.74E-84 | wgd | |
Cpe20g00081 | Cpe-Chr20:421585 | Cpe03g00977 | Cpe-Chr3:7885521 | 2.04E-35 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49224 | PF03634 | TCP | 2.10E-27 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe03g00977 | - | - | csv:101216548 | 382.104 |