Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00977 ATGCGTAATGCTAATGAATTGCAAAAAAAATGTACAAATTATATAGCTGCAGGCAAACATGATGAGAGACATACTATGATTACAAATTCTAAAGAAGAGAATTCCCCTCCAAAACTAGCAGCTTCATCAAGCTCATCGGCGGCGGTGGCAACGCCATGGCTTAGGTTGAAGGATCCGAGGATCGTGCGCGTGTCGCGAGCTTTCGGAGGCAAGGATCGACATAGCAAAGTTTGTACCATAAGAGGGCTGCGCGACAGGCGTGTAAGGCTTTCGGTTTCGACTGCAATTCAGCTCTATGATCTTCAGGACCGCCTCGGCCTTAATCAGCCAAGCAAGGTCGTCGACTGGCTGCTCAACGTCGCCAAGGATGAAATCGACGAACTCCCTCCATTGCCAATACCATCTGCAAGCCTCGGCCTTCACTACCAATCTATGCTACCACCTCATATAGCACATAGATCGGAGTTCAAAATCAACTCCGGCATCGACAAGGTCGAAATCGACGACGACGACGATGACGAACAAAAGCAACACAAATCCAATTCTAATCCTTCTTCCTTCTCAGCCCTTTTGAACAATGTGTCTGCCCCTCCATTTGGGTTCCATTGGGATCCCTCGTTGTCGTCGTCGTCGTCGTCGTCAACAACAAATCTTCCGTTCTTTACATCTCAAGCTGAGGATCTTCATAACTTCAATCATGTCACCCCTTTGTCACTCTCAACTGGCTCTCAGTTCTTGGAGTTCAATAATCACTTGCACCAAAATTTCTTCATTAACAACTCTTTGAATACACCTCCTCCTATGCACTCAATAACCCACCCCGCTGTTAGGCCTTTTCATTTCAGCATGGCTACCAAATTTGTTGCTCAACATAAGAATAACAATGGAGATCCTGCAAATAAAGAGGACGGCTTCGGTTCTGATGAATGA 930 46.13 MRNANELQKKCTNYIAAGKHDERHTMITNSKEENSPPKLAASSSSSAAVATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNVAKDEIDELPPLPIPSASLGLHYQSMLPPHIAHRSEFKINSGIDKVEIDDDDDDEQKQHKSNSNPSSFSALLNNVSAPPFGFHWDPSLSSSSSSSTTNLPFFTSQAEDLHNFNHVTPLSLSTGSQFLEFNNHLHQNFFINNSLNTPPPMHSITHPAVRPFHFSMATKFVAQHKNNNGDPANKEDGFGSDE 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7885521 7887075 + Cp4.1LG03g15300.1 Cpe03g00977 466694

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00977 309 PANTHER TRANSCRIPTION FACTOR TCP2-LIKE 26 175 - -
Cpe03g00977 309 MobiDBLite consensus disorder prediction 22 44 - -
Cpe03g00977 309 MobiDBLite consensus disorder prediction 166 187 - -
Cpe03g00977 309 Pfam TCP family transcription factor 70 171 IPR017887 -
Cpe03g00977 309 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 26 175 IPR005333 GO:0003700
Cpe03g00977 309 MobiDBLite consensus disorder prediction 30 44 - -
Cpe03g00977 309 ProSiteProfiles TCP domain profile. 70 128 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00977 - - - csv:101216548 382.104
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00977 Cpe-Chr3:7885521 Cpe18g00710 Cpe-Chr18:7003353 2.37E-44 dispersed
Cpe09g00751 Cpe-Chr9:6997893 Cpe03g00977 Cpe-Chr3:7885521 1.25E-28 dispersed
Cpe02g01404 Cpe-Chr2:12257575 Cpe03g00977 Cpe-Chr3:7885521 3.74E-84 wgd
Cpe20g00081 Cpe-Chr20:421585 Cpe03g00977 Cpe-Chr3:7885521 2.04E-35 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g01152 . 36 250 TCP Transcription Factor Family AT5G23280 62.7 3.3e-64 242.3
Cpe09g00495 . 33 230 TCP Transcription Factor Family AT5G23280 58.0 2.1e-58 223.0
Cpe20g00029 CCT,ECH 35 134 TCP Transcription Factor Family AT3G47620 83.0 2.5e-39 160.6
Cpe04g00477 . 33 276 TCP Transcription Factor Family AT3G27010 55.5 5.1e-54 208.8
Cpe01g01152 . 8 248 TCP Transcription Factor Family AT5G08330 55.2 9.6e-61 230.7
Cpe09g00495 . 10 228 TCP Transcription Factor Family AT5G08330 57.0 8.1e-60 227.6
Cpe13g00517 . 1 103 TCP Transcription Factor Family AT5G08330 82.7 3.0e-38 156.0
Cpe04g01456 CCT,CST 31 177 TCP Transcription Factor Family AT5G60970 56.1 2.0e-38 157.1
Cpe03g00977 . 53 164 TCP Transcription Factor Family AT3G02150 66.4 2.2e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006589 2 2 1 2 1 1 2 1 1 1 1 1 2 0 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49224 PF03634 TCP 2.10E-27 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g00977 Cpe_Chr03 FPKM 0.694798 1.311542 5.367702 6.963647 19.425961 16.884825 16.221094 0.0 0.03623 0.0