Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00977 ATGCGTAATGCTAATGAATTGCAAAAAAAATGTACAAATTATATAGCTGCAGGCAAACATGATGAGAGACATACTATGATTACAAATTCTAAAGAAGAGAATTCCCCTCCAAAACTAGCAGCTTCATCAAGCTCATCGGCGGCGGTGGCAACGCCATGGCTTAGGTTGAAGGATCCGAGGATCGTGCGCGTGTCGCGAGCTTTCGGAGGCAAGGATCGACATAGCAAAGTTTGTACCATAAGAGGGCTGCGCGACAGGCGTGTAAGGCTTTCGGTTTCGACTGCAATTCAGCTCTATGATCTTCAGGACCGCCTCGGCCTTAATCAGCCAAGCAAGGTCGTCGACTGGCTGCTCAACGTCGCCAAGGATGAAATCGACGAACTCCCTCCATTGCCAATACCATCTGCAAGCCTCGGCCTTCACTACCAATCTATGCTACCACCTCATATAGCACATAGATCGGAGTTCAAAATCAACTCCGGCATCGACAAGGTCGAAATCGACGACGACGACGATGACGAACAAAAGCAACACAAATCCAATTCTAATCCTTCTTCCTTCTCAGCCCTTTTGAACAATGTGTCTGCCCCTCCATTTGGGTTCCATTGGGATCCCTCGTTGTCGTCGTCGTCGTCGTCGTCAACAACAAATCTTCCGTTCTTTACATCTCAAGCTGAGGATCTTCATAACTTCAATCATGTCACCCCTTTGTCACTCTCAACTGGCTCTCAGTTCTTGGAGTTCAATAATCACTTGCACCAAAATTTCTTCATTAACAACTCTTTGAATACACCTCCTCCTATGCACTCAATAACCCACCCCGCTGTTAGGCCTTTTCATTTCAGCATGGCTACCAAATTTGTTGCTCAACATAAGAATAACAATGGAGATCCTGCAAATAAAGAGGACGGCTTCGGTTCTGATGAATGA 930 46.13 MRNANELQKKCTNYIAAGKHDERHTMITNSKEENSPPKLAASSSSSAAVATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNVAKDEIDELPPLPIPSASLGLHYQSMLPPHIAHRSEFKINSGIDKVEIDDDDDDEQKQHKSNSNPSSFSALLNNVSAPPFGFHWDPSLSSSSSSSTTNLPFFTSQAEDLHNFNHVTPLSLSTGSQFLEFNNHLHQNFFINNSLNTPPPMHSITHPAVRPFHFSMATKFVAQHKNNNGDPANKEDGFGSDE 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7885521 7887075 + Cp4.1LG03g15300.1 Cpe03g00977 466694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00977 309 PANTHER TRANSCRIPTION FACTOR TCP2-LIKE 26 175 - -
Cpe03g00977 309 MobiDBLite consensus disorder prediction 22 44 - -
Cpe03g00977 309 MobiDBLite consensus disorder prediction 166 187 - -
Cpe03g00977 309 Pfam TCP family transcription factor 70 171 IPR017887 -
Cpe03g00977 309 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 26 175 IPR005333 GO:0003700
Cpe03g00977 309 MobiDBLite consensus disorder prediction 30 44 - -
Cpe03g00977 309 ProSiteProfiles TCP domain profile. 70 128 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00977 Cpe-Chr3:7885521 Cpe18g00710 Cpe-Chr18:7003353 2.37E-44 dispersed
Cpe09g00751 Cpe-Chr9:6997893 Cpe03g00977 Cpe-Chr3:7885521 1.25E-28 dispersed
Cpe02g01404 Cpe-Chr2:12257575 Cpe03g00977 Cpe-Chr3:7885521 3.74E-84 wgd
Cpe20g00081 Cpe-Chr20:421585 Cpe03g00977 Cpe-Chr3:7885521 2.04E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49224 PF03634 TCP 2.10E-27 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00977 - - csv:101216548 382.104