Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01002 ATGCAACTGGTACCAAATAATGATGAAAATACAGATGATATTCTGGAACGTGCGCCCATTTTAAGTCAATTGGATTTTCTGCCACAGTCAGTGGGATCATCATCCTCTGCTGAGATTATAGCTATAGGGAGAGAGAGCTCTGGTAGTGATGATGATTCACACAATCTTAATGTTGATGAAACCAGTCATCTGGTGAATGCAGACCAACCACAATGTCGTATATGCCTTGACACTGGAGGAGAAGATTTAATTGCTCCATGCCACTGCAAAGGCACTCAAAAGTATGTCCATAGATCATGTCTTGATAATTGGAGGTCCACAAAGGAGGGCTTTGCTTTTGCTCATTGTACAGAGTGCAGAGCTATGTTCGTGTTACGTGCAAATGTCCCTCCTGATCGCTGGTGGTTGAGACTGAAGTTTCAATTTCTTGTTGCTAGGGACCATGCGTTCATTTTCATTATTGTTCAACTGATTGTGGCATTCTTGGGGGTGTTGGTGTACAAATTCTACGGAGAGGAACTAAGGGAAATGTTTGGTTATGAAGAACACCCATATGGGTTCTATGCCATGGCTGTCTTGGCGATCATCTTGGTTGGCTTACTCTATGGTTTCTTCATAGCCATTATATGCGGGCAGAGGATAAACGAACGCCACTACCATGTCCTTGCTAAGCAAGAACTGACAAAGGAATATATAGTTGAAGATCGAGAACATAACAAGAACGTTCCTGAATTAGACCCCAGCCATGTTATGGAGCTAAGGATGTTGGGGCTGTATTAA 780 42.69 MQLVPNNDENTDDILERAPILSQLDFLPQSVGSSSSAEIIAIGRESSGSDDDSHNLNVDETSHLVNADQPQCRICLDTGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGLY 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8210858 8214955 + Cp4.1LG03g15080.1 Cpe03g01002 466719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01002 259 PANTHER OS02G0132300 PROTEIN 2 258 - -
Cpe03g01002 259 Pfam RING-variant domain 72 119 IPR011016 GO:0008270
Cpe03g01002 259 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 258 - -
Cpe03g01002 259 SUPERFAMILY RING/U-box 67 123 - -
Cpe03g01002 259 CDD RING_CH-C4HC3_MARCH 72 120 - -
Cpe03g01002 259 ProSiteProfiles Zinc finger RING-CH-type profile. 64 126 IPR011016 GO:0008270
Cpe03g01002 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 131 IPR013083 -
Cpe03g01002 259 SMART ringv_2 71 120 IPR011016 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01002 Cpe-Chr3:8210858 Cpe10g00582 Cpe-Chr10:3390404 1.60E-11 dispersed
Cpe02g01767 Cpe-Chr2:14365585 Cpe03g01002 Cpe-Chr3:8210858 8.25E-176 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01002 - - bhj:120075028 501.13