Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01028 ATGCTTCATTCCGTAATAGCTGCTAGACAAACTTGTAGCCTACTTGCTGTCACTTGCGGAAGTGTTCTTAAAGCGAAATGCGAGGAGGATGTCAATGAGGATAAGTTGAAATATCCGTTTCCGGGATTAGTTTCTTCTGGACGATTGGAGGTTCGAGCTTTGACAAATCCAAGCACGGATGAATTTAGTAGAATTGTGGAATCGTGTCTACCGAGCTTTGTCTACTTGCAAGGGGAACAACTAGGAAATGATGAAATTGGGTCTTTGGTTTGGAATGGTGTTGATTTGTTTCTTGAAGATTTATGTGGGCTGTTCAATACTGCACTACCAACTGTTGTGTATTTAGAAATCCCAAATGGAGGCAGAATAGCGGAGGCGCTTCATTCTAAGGGAATTCCTTATGTCATGTATTGGAACAGCACATTTTCGTGTTATGCTGCAGCTCATTTTCGTAATGCATTGTTTTCAGTGTTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACGTGCTGCTTTTAGGCTTCATTGCATGGGGAGCAATCATGCTCTGCCTGGGATTGTTGACATTATTACGAGTGATTTAGAGCCACAGGTTATTGGGGAACCCCTAAAGATTAATGTAGAACCCCCCAAGGTCGACGTAGGTGAAGGTGAAGATGAAGATGGTTCATTAGAAACCCTCACTGCCATAAGTATTCACGATAATAGTGTGACCGTGAGATTTCTCATCTGTGGAGTGGCTTGCACGCCGGATGCATGCTTATTGAGATCATTGGAGGATGGCCTTAATGCTCTTTTGAACATTGAAATACGTGGGTGTAAACTTCAGGGAAAGTTCAGTGCTCCTCCGCCACCTCTTCAGGCGGGATCCTTTGCTCGTGGAGTTGTGACGATGCGGTGTGATATGGTGACTTGTAGCTCAGCCCACATCTCAATATTGGTGTCTGGTAGCCCTCATACTTGTTTTGATGATCAGCTCTTAGAGAAACATATCAAACACGAGATTATTGAAAATAGCCAGTTAGTTCATGCCATGTATGATTGTGAGGACAACAAACATCACATGCACGAGCCTCGAAAATCTGCTTCAGTTGCCTGTGGGGCAACAGTATTTGAGGTTTCCATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAGCTAGCACCTGATATGTCGTATCGGAGTTTAGTTGCACTCGGCGTTGGGGGAGTTCAGGGTTTGCCTGTTGCTTCTTTCGAGAAAGAGGATGCTGAGCGATTGCTCTTCTTTTGTTCAAAAGATGTGAATGATAAACATTCAGATCAGTTGCTTGTAAGCGTATTACCCAGCTGGTTTAAGCCACCGCCTCCTAGTAGAAAGAGAGTAGAACCAAGCCAAGGAATACGGAGCACCCTTTCACACGATCGTCTTGCATATGCAAACATCCCTTCCATTAGAAGAGTAGGTAGAGAGGAGCCTGCACCAATGAATGGGTTCAAGACACCTTTACTCCCATCAAGGAAAAGATTAAAAGTAGCCTCCATGAGGCCTATTCCACGCGTGCATAGGAATAAAATGACGTCGTTCTCTGGATTGACCGAAGCAGATGGGAACAATGGAGGACAACCCAAGGCTTGTTTTCCTGTTGTTACCCCATCAAAGCATGTAACTGTAGGATCAACTTCTGCAACACAAAGAAAATCCTTTTCGAGCTCATCTCAGTCTAAGCAGATTATTTCCTTAAACCCGCTGCCTCTAAAGAAGCATGGTTGTGGAAGAAACCCAATTCAAGATTGCTCAGAGGAGGAGTTCTTGAAGGATGTTATGGAGTTTCTACTACTTAGAGGACATTCACGACTTATACCTCAAGGTGGACTTGAGGAGTTCCCAGACGCCATACTCAACGGAAAGCGTCTTGACCTCTTTAACTTGTATAAGGAGGTGGTCACTCGAGGAGGCTTTCATGTCGGTAATGGTATCAACTGGAAAGGGCAGATCTTCTCTAAGATGCATAACTACACAATGTCCAACAGAATGACTGGTGTCGGAAATACACTGAAACGACATTACGAGACGTACCTTCTTGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGCTGCCTTTTGTGCCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGTGGTGAATGGGCTCATTTCGGGTGCGATCGAAGGCAGGGTCTCGGTGCATTTAAGGATTATGCCAAAACAGATGGGCTAGAGTATGTTTGTCCACATTGTAGCATTACAACTTACAACAAGAAGAAACCACACAGAGTAGCAAACGGGTCTCCGCAAGGACTAACGAATCCACCACAGATACCTTGA 2358 44.66 MLHSVIAARQTCSLLAVTCGSVLKAKCEEDVNEDKLKYPFPGLVSSGRLEVRALTNPSTDEFSRIVESCLPSFVYLQGEQLGNDEIGSLVWNGVDLFLEDLCGLFNTALPTVVYLEIPNGGRIAEALHSKGIPYVMYWNSTFSCYAAAHFRNALFSVLQSSSTHTWDAFQLARAAFRLHCMGSNHALPGIVDIITSDLEPQVIGEPLKINVEPPKVDVGEGEDEDGSLETLTAISIHDNSVTVRFLICGVACTPDACLLRSLEDGLNALLNIEIRGCKLQGKFSAPPPPLQAGSFARGVVTMRCDMVTCSSAHISILVSGSPHTCFDDQLLEKHIKHEIIENSQLVHAMYDCEDNKHHMHEPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDMSYRSLVALGVGGVQGLPVASFEKEDAERLLFFCSKDVNDKHSDQLLVSVLPSWFKPPPPSRKRVEPSQGIRSTLSHDRLAYANIPSIRRVGREEPAPMNGFKTPLLPSRKRLKVASMRPIPRVHRNKMTSFSGLTEADGNNGGQPKACFPVVTPSKHVTVGSTSATQRKSFSSSSQSKQIISLNPLPLKKHGCGRNPIQDCSEEEFLKDVMEFLLLRGHSRLIPQGGLEEFPDAILNGKRLDLFNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMSNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYNKKKPHRVANGSPQGLTNPPQIP 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8409324 8416458 - Cp4.1LG03g14740.1 Cpe03g01028 466745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01028 785 CDD PHD_ARID4_like 706 757 - -
Cpe03g01028 785 SUPERFAMILY ARID-like 596 711 IPR036431 GO:0003677
Cpe03g01028 785 SMART ARID_2 593 696 - -
Cpe03g01028 785 ProSiteProfiles ARID domain profile. 596 700 IPR001606 GO:0003677
Cpe03g01028 785 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 3 773 IPR042293 -
Cpe03g01028 785 SUPERFAMILY FYVE/PHD zinc finger 699 764 IPR011011 -
Cpe03g01028 785 Gene3D - 572 706 IPR036431 GO:0003677
Cpe03g01028 785 Pfam ARID/BRIGHT DNA binding domain 599 696 IPR001606 GO:0003677
Cpe03g01028 785 CDD ARID 598 696 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01028 - - - cmax:111479879 1550.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01754 Cpe-Chr2:14307058 Cpe03g01028 Cpe-Chr3:8409324 0 dispersed
Cpe12g00555 Cpe-Chr12:5659218 Cpe03g01028 Cpe-Chr3:8409324 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe17g00251 . 45 384 ARID Transcription Factor Family AT1G04880 60.3 4.8e-106 382.1
Cpe12g00084 . 1 373 ARID Transcription Factor Family AT1G04880 54.2 6.5e-103 371.7
Cpe02g00012 . 143 422 ARID Transcription Factor Family AT1G20910 67.5 2.0e-103 373.2
Cpe08g01275 . 207 478 ARID Transcription Factor Family AT1G20910 59.7 8.8e-88 321.2
Cpe14g01071 . 163 433 ARID Transcription Factor Family AT1G20910 50.9 7.0e-69 258.5
Cpe02g00052 CCT 16 312 ARID Transcription Factor Family AT1G76110 65.3 1.9e-110 396.4
Cpe06g00043 CCT 16 284 ARID Transcription Factor Family AT1G76110 59.4 1.4e-94 343.6
Cpe02g00012 . 52 452 ARID Transcription Factor Family AT1G76510 60.4 2.2e-127 453.0
Cpe08g01275 . 198 508 ARID Transcription Factor Family AT1G76510 61.7 2.5e-107 386.3
Cpe14g01071 . 154 463 ARID Transcription Factor Family AT1G76510 53.2 1.4e-86 317.4
Cpe02g01754 . 113 875 ARID Transcription Factor Family AT3G43240 59.8 3.7e-260 894.8
Cpe03g01028 . 1 781 ARID Transcription Factor Family AT3G43240 58.3 4.1e-259 891.3
Cpe12g00555 . 2 771 ARID Transcription Factor Family AT3G43240 57.1 7.9e-255 877.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49227 PF01388 ARID 1.20E-13 CL0123 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01028 Cpe_Chr03 FPKM 14.427083 17.139769 28.230082 29.356443 34.525177 36.062557 37.897243 32.889778 33.572803 34.553925