Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01028 ATGCTTCATTCCGTAATAGCTGCTAGACAAACTTGTAGCCTACTTGCTGTCACTTGCGGAAGTGTTCTTAAAGCGAAATGCGAGGAGGATGTCAATGAGGATAAGTTGAAATATCCGTTTCCGGGATTAGTTTCTTCTGGACGATTGGAGGTTCGAGCTTTGACAAATCCAAGCACGGATGAATTTAGTAGAATTGTGGAATCGTGTCTACCGAGCTTTGTCTACTTGCAAGGGGAACAACTAGGAAATGATGAAATTGGGTCTTTGGTTTGGAATGGTGTTGATTTGTTTCTTGAAGATTTATGTGGGCTGTTCAATACTGCACTACCAACTGTTGTGTATTTAGAAATCCCAAATGGAGGCAGAATAGCGGAGGCGCTTCATTCTAAGGGAATTCCTTATGTCATGTATTGGAACAGCACATTTTCGTGTTATGCTGCAGCTCATTTTCGTAATGCATTGTTTTCAGTGTTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACGTGCTGCTTTTAGGCTTCATTGCATGGGGAGCAATCATGCTCTGCCTGGGATTGTTGACATTATTACGAGTGATTTAGAGCCACAGGTTATTGGGGAACCCCTAAAGATTAATGTAGAACCCCCCAAGGTCGACGTAGGTGAAGGTGAAGATGAAGATGGTTCATTAGAAACCCTCACTGCCATAAGTATTCACGATAATAGTGTGACCGTGAGATTTCTCATCTGTGGAGTGGCTTGCACGCCGGATGCATGCTTATTGAGATCATTGGAGGATGGCCTTAATGCTCTTTTGAACATTGAAATACGTGGGTGTAAACTTCAGGGAAAGTTCAGTGCTCCTCCGCCACCTCTTCAGGCGGGATCCTTTGCTCGTGGAGTTGTGACGATGCGGTGTGATATGGTGACTTGTAGCTCAGCCCACATCTCAATATTGGTGTCTGGTAGCCCTCATACTTGTTTTGATGATCAGCTCTTAGAGAAACATATCAAACACGAGATTATTGAAAATAGCCAGTTAGTTCATGCCATGTATGATTGTGAGGACAACAAACATCACATGCACGAGCCTCGAAAATCTGCTTCAGTTGCCTGTGGGGCAACAGTATTTGAGGTTTCCATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAGCTAGCACCTGATATGTCGTATCGGAGTTTAGTTGCACTCGGCGTTGGGGGAGTTCAGGGTTTGCCTGTTGCTTCTTTCGAGAAAGAGGATGCTGAGCGATTGCTCTTCTTTTGTTCAAAAGATGTGAATGATAAACATTCAGATCAGTTGCTTGTAAGCGTATTACCCAGCTGGTTTAAGCCACCGCCTCCTAGTAGAAAGAGAGTAGAACCAAGCCAAGGAATACGGAGCACCCTTTCACACGATCGTCTTGCATATGCAAACATCCCTTCCATTAGAAGAGTAGGTAGAGAGGAGCCTGCACCAATGAATGGGTTCAAGACACCTTTACTCCCATCAAGGAAAAGATTAAAAGTAGCCTCCATGAGGCCTATTCCACGCGTGCATAGGAATAAAATGACGTCGTTCTCTGGATTGACCGAAGCAGATGGGAACAATGGAGGACAACCCAAGGCTTGTTTTCCTGTTGTTACCCCATCAAAGCATGTAACTGTAGGATCAACTTCTGCAACACAAAGAAAATCCTTTTCGAGCTCATCTCAGTCTAAGCAGATTATTTCCTTAAACCCGCTGCCTCTAAAGAAGCATGGTTGTGGAAGAAACCCAATTCAAGATTGCTCAGAGGAGGAGTTCTTGAAGGATGTTATGGAGTTTCTACTACTTAGAGGACATTCACGACTTATACCTCAAGGTGGACTTGAGGAGTTCCCAGACGCCATACTCAACGGAAAGCGTCTTGACCTCTTTAACTTGTATAAGGAGGTGGTCACTCGAGGAGGCTTTCATGTCGGTAATGGTATCAACTGGAAAGGGCAGATCTTCTCTAAGATGCATAACTACACAATGTCCAACAGAATGACTGGTGTCGGAAATACACTGAAACGACATTACGAGACGTACCTTCTTGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGCTGCCTTTTGTGCCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGTGGTGAATGGGCTCATTTCGGGTGCGATCGAAGGCAGGGTCTCGGTGCATTTAAGGATTATGCCAAAACAGATGGGCTAGAGTATGTTTGTCCACATTGTAGCATTACAACTTACAACAAGAAGAAACCACACAGAGTAGCAAACGGGTCTCCGCAAGGACTAACGAATCCACCACAGATACCTTGA 2358 44.66 MLHSVIAARQTCSLLAVTCGSVLKAKCEEDVNEDKLKYPFPGLVSSGRLEVRALTNPSTDEFSRIVESCLPSFVYLQGEQLGNDEIGSLVWNGVDLFLEDLCGLFNTALPTVVYLEIPNGGRIAEALHSKGIPYVMYWNSTFSCYAAAHFRNALFSVLQSSSTHTWDAFQLARAAFRLHCMGSNHALPGIVDIITSDLEPQVIGEPLKINVEPPKVDVGEGEDEDGSLETLTAISIHDNSVTVRFLICGVACTPDACLLRSLEDGLNALLNIEIRGCKLQGKFSAPPPPLQAGSFARGVVTMRCDMVTCSSAHISILVSGSPHTCFDDQLLEKHIKHEIIENSQLVHAMYDCEDNKHHMHEPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDMSYRSLVALGVGGVQGLPVASFEKEDAERLLFFCSKDVNDKHSDQLLVSVLPSWFKPPPPSRKRVEPSQGIRSTLSHDRLAYANIPSIRRVGREEPAPMNGFKTPLLPSRKRLKVASMRPIPRVHRNKMTSFSGLTEADGNNGGQPKACFPVVTPSKHVTVGSTSATQRKSFSSSSQSKQIISLNPLPLKKHGCGRNPIQDCSEEEFLKDVMEFLLLRGHSRLIPQGGLEEFPDAILNGKRLDLFNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMSNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYNKKKPHRVANGSPQGLTNPPQIP 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8409324 8416458 - Cp4.1LG03g14740.1 Cpe03g01028 466745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01028 785 CDD PHD_ARID4_like 706 757 - -
Cpe03g01028 785 SUPERFAMILY ARID-like 596 711 IPR036431 GO:0003677
Cpe03g01028 785 SMART ARID_2 593 696 - -
Cpe03g01028 785 ProSiteProfiles ARID domain profile. 596 700 IPR001606 GO:0003677
Cpe03g01028 785 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 3 773 IPR042293 -
Cpe03g01028 785 SUPERFAMILY FYVE/PHD zinc finger 699 764 IPR011011 -
Cpe03g01028 785 Gene3D - 572 706 IPR036431 GO:0003677
Cpe03g01028 785 Pfam ARID/BRIGHT DNA binding domain 599 696 IPR001606 GO:0003677
Cpe03g01028 785 CDD ARID 598 696 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01754 Cpe-Chr2:14307058 Cpe03g01028 Cpe-Chr3:8409324 0 dispersed
Cpe12g00555 Cpe-Chr12:5659218 Cpe03g01028 Cpe-Chr3:8409324 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49227 PF01388 ARID 1.20E-13 CL0123 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01028 - - cmax:111479879 1550.03