Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe03g01033 | CTCTCAGCTGCGGTTCTCCTCGCCGGCGTCTCGTCGGACGACCACGTGACCGCCGTGAGAAGCACGTGCGCGGTTACTCTGTATCCCGAGCTATGCCAGTCGACAATATCCACCGCCGTGGAAACCAGCTCGAAGAAGGTGTCGAGTTCAAAAGACATAATCGAAGCGTCGGTAAACATCACGATTTCTGCAGTGAAACAAAACTATAAAAGCATCAAGAAATTGCTTGAAACGACGAAGCATCTGACAAAGCGAGAGAAAATTGCTCTCCATGACTGTCTGGAAACAGGGGAGGAGACGCTTAGAGAGCTGTACGAGGTAGTGGAAGATCTCAATGAGTATCCGAAAAAGAAATCTCTGCCACAATACGCCGATGACCTCAAAACCTTACTCAGTTCCGCCATTACTAATCAGGAGACATGCGTGGACGGATTTTCACACGACAGAGCCGACAAGAAGATACGAGAATCATTGCTAGCAGGACAAATTCATGTCGAGAAATTGTGCAGTGTTGCCTTAGCCTTGATTAAGAATCTCACCGACACCGACATTGCCAATCATTACAACATCCGAGGAAGGTCCATGGCCATGTCGGAATTTAATTGGCCGGATTGGATGTCGCCCGGTGACCGGAGGCTTTTGCAAGCGTCGTCTACGGCGACTCCGGATGTAGTAGTGGCAGCTGATGGAAGTGGCGATTTCCAGACGGTGTCGGCAGCTGTGGCGGCGGCGCCGAGTAGGAGTAGCCGGAGATATATAATAAGAATTAAAGCGGGGGTTTATAGGGAAAATGTGAATGTGCCGAGTAGTAAGACGAATATAATGTTCTGGGGAGATGGAAGAACCACCACCATAATCACCGGGAACAGGAATGTCGTCGACGGCAGCACCACCTTCAACTCCGCCACCGGCTACGGCAAGGTCGACGAGCTCGAACACCAAGCTTTCCGCCAGAAAACTCGCCGCCGACTCATTATACTACTTCTCTCTGTTGTTCTTCTTATTGCTTTGGTCATCGGCGCCGTCGTCGGAATCGTCATTCATAAACGGAACTCTTCGTCTTCTTCGACCACGAGTTCGACTCCTCCCACTGAGCTCCCTCCGGCTGCTTCACTCAAAACTCTCTGTAGCGTCACTCAGTATCCGAGTTCCTGTCAGTCCTCTCTCGAAAACTCCAACACCACCGATCCGATATTTCTCTTCAAGCTTTCTCTCCGAGTCGCCACCGATTCGATCTCAAAACTCTCTGATTATGCCTCTAACCTAAATTCCAGTACTAGTGATGTGAAGGTTAAAGCTGCGATTGGAATCTGCTCGTCTGTTTTTAAAGATGCCATTGACACACTAAACGACACCGTTTCATCCATGGAAGTGGATCGCCATGGCGAGAAGTTCTTGTCGCCGTCGAGGATTGAAGATCTGAAAACCTGGCTGAGCACCACAATCACAGACCAAGAAACCTGCCTCGATGCCATTCGAGATCTAAACCAGACTGCGGTTCTCGAAAATTTGCAAGCGGTAATGGCGAACTCGACCGAGTTCACTAGCAATAGTTTAGCGATTGTGACCAAAATCCTGGGGCTGCCCAGTCTTACAGACGCCGAGGCCGCAAAGTTCACCGTCCGGACGTTCCTCAACGGCGAGGATTGGTTGCCGGCGACCAGTGTAAAATTTGATACATCCTTG | 1686 | 50.12 | LSAAVLLAGVSSDDHVTAVRSTCAVTLYPELCQSTISTAVETSSKKVSSSKDIIEASVNITISAVKQNYKSIKKLLETTKHLTKREKIALHDCLETGEETLRELYEVVEDLNEYPKKKSLPQYADDLKTLLSSAITNQETCVDGFSHDRADKKIRESLLAGQIHVEKLCSVALALIKNLTDTDIANHYNIRGRSMAMSEFNWPDWMSPGDRRLLQASSTATPDVVVAADGSGDFQTVSAAVAAAPSRSSRRYIIRIKAGVYRENVNVPSSKTNIMFWGDGRTTTIITGNRNVVDGSTTFNSATGYGKVDELEHQAFRQKTRRRLIILLLSVVLLIALVIGAVVGIVIHKRNSSSSSTTSSTPPTELPPAASLKTLCSVTQYPSSCQSSLENSNTTDPIFLFKLSLRVATDSISKLSDYASNLNSSTSDVKVKAAIGICSSVFKDAIDTLNDTVSSMEVDRHGEKFLSPSRIEDLKTWLSTTITDQETCLDAIRDLNQTAVLENLQAVMANSTEFTSNSLAIVTKILGLPSLTDAEAAKFTVRTFLNGEDWLPATSVKFDTSL | 562 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 8430848 | 8439166 | - | Cp4.1LG03g14830.1 | Cpe03g01033 | 466750 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe03g01033 | 562 | SUPERFAMILY | Pectin lyase-like | 217 | 304 | IPR011050 | - | |
| Cpe03g01033 | 562 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 372 | 526 | IPR035513 | - | |
| Cpe03g01033 | 562 | PANTHER | PECTINESTERASE | 321 | 526 | - | - | |
| Cpe03g01033 | 562 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 18 | 180 | IPR035513 | - | |
| Cpe03g01033 | 562 | Pfam | Plant invertase/pectin methylesterase inhibitor | 372 | 521 | IPR006501 | GO:0004857 | |
| Cpe03g01033 | 562 | Pfam | Plant invertase/pectin methylesterase inhibitor | 18 | 175 | IPR006501 | GO:0004857 | |
| Cpe03g01033 | 562 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 15 | 181 | IPR035513 | - | |
| Cpe03g01033 | 562 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 369 | 525 | IPR035513 | - | |
| Cpe03g01033 | 562 | Gene3D | - | 217 | 316 | IPR012334 | - | |
| Cpe03g01033 | 562 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 12 | 180 | IPR006501 | GO:0004857 | |
| Cpe03g01033 | 562 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 352 | 525 | IPR006501 | GO:0004857 | |
| Cpe03g01033 | 562 | CDD | PMEI-like_3 | 374 | 525 | - | - | |
| Cpe03g01033 | 562 | CDD | PMEI-like_3 | 21 | 180 | - | - | |
| Cpe03g01033 | 562 | Pfam | Pectinesterase | 223 | 303 | IPR000070 | GO:0030599|GO:0042545 | |
| Cpe03g01033 | 562 | PANTHER | PECTINESTERASE | 321 | 526 | - | - | |
| Cpe03g01033 | 562 | PANTHER | PECTINESTERASE | 15 | 303 | - | - | |
| Cpe03g01033 | 562 | SMART | PMEI_2 | 367 | 521 | IPR006501 | GO:0004857 | |
| Cpe03g01033 | 562 | SMART | PMEI_2 | 14 | 175 | IPR006501 | GO:0004857 | |
| Cpe03g01033 | 562 | PANTHER | PECTINESTERASE | 15 | 303 | - | - | |
| Cpe03g01033 | 562 | ProSitePatterns | Pectinesterase signature 1. | 248 | 267 | IPR018040 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe03g01033 | Cpe-Chr3:8430848 | Cpe12g00918 | Cpe-Chr12:7922749 | 8.24E-51 | dispersed | |
| Cpe20g00031 | Cpe-Chr20:152620 | Cpe03g01033 | Cpe-Chr3:8430848 | 9.94E-24 | dispersed | |
| Cpe20g00033 | Cpe-Chr20:154643 | Cpe03g01033 | Cpe-Chr3:8430848 | 9.94E-24 | dispersed | |
| Cpe12g00550 | Cpe-Chr12:5615632 | Cpe03g01033 | Cpe-Chr3:8430848 | 2.74E-114 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe03g01033 | K01051 | - | csv:101207996 | 424.091 |