Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01039 AATCTTATTTCGGAGAAACTTCCTTCTGGCTGGCCTTTGCCGGCTGTGCTGGCCAGAGTTGGTATCTCAGCTCGATTTGGGGAGTTCTTGATCATTCTGCAGCTGGGATTCGACCTGGATATCCTCGTCGCGTCAGTGCAAATGGGATCAACAGAGGAGAAAACAAATTACCTATCAGATGAAGGAACTCCGTTGAAGTCCCCACCGGTCGCGAAAAACGTATCGCATAGCTTCGATTGCGAGACGGGTCCTGTTCGTTCTTCCCCAGATGTTACAAGATGGTGGAAGACTAACAACATTCGTATTAGACCTCTTAGAAGTGCTTATATAGTGTTAGTTAGAGCAAAGATCAACGTGTTACTACCTTTTGGTCCTTTGGCTATTCTGCTACATTACTTGACCGGAAAGCATGGATGGGTCTTCTTTTTCACTCTACTTGGAATTGCACCCTTGGCAGAGCGTCTCGGTTATGCAACCGAGCAGCTTGCCTTCTACACTGGACCAACAGTTGGCGGTCTTTTGAATGCAACATTTGGAAATGCTACCGAAATGATTATATCAATTTATGCGTTAAAGAGTGGGATGATTAGGGTGGTTCAACAGTCATTACTGGGTTCAATCTTGTCAAATATGCTCCTTGTTCTTGGTTGTGCGTTCTTTACTGGTGGGATTGTTCATCATAAGGTGCAGGTTTTCAATAAGGGTTCTGCTGTTGTTAATTCAGGATTGTTGTTGATGGCTGTTATGGGAACAACTTTTCCGGCTGTTCTTCATTTCACCCACACAGAACTTCATTCTGGAGAGTCAGCACTATCTCTTTCAAGATTTAGCAGTTGTATCATGTTAATTGCATATGCAAGCTACCTTTTCTTTCAACTTAAAAGTCAGCAGGATCTCTATGGTCCTCTTGATGAGGTAGTTGAAGATGAAGTTGAGGATGATTCTGAGATTTATGCTTGGGAAGCAATTGGATGGCTTGCTATCTTGACTGTATGGGTATCTATTTTATCTGGATATCTTGTTGATGCTATCCAGGGAGCATCTGAATCATTGAATTTGCCGGTAGCTTTTATTAGTGTAATTTTGTTGCCAATTGTTGGAAATGCTGCTGAACATGCAAGTGCAATCATGTTTGCCATGAAGGATAAGCTTGACATCACCCTTGGAGTTGCTATTGGGTCGTCGACACAAATATCCATGTTTGTGATCCCGTTTTGCGTGGTTGTTGGATGGTGCATGGGGGAACCAATGGACTTGAACTTTAAACTCTTTGAGACAGCAACTTTGTTCATCACTGTTCTAGTGGTGGCCTTTATGTTGCAGGAGGGGACATCCAATTATTTCAAAGGTCTAATGCTTATTCTATGCTACCTCATAGTGGCAGCCAGCTTTTTTATAATGACTAACCCTCGAAGCAAGTATGTCCCTGGGAATTTACTGCAACCTGAACCTTTGCATTGCATTGGTTCTCAAACCACCATTGCTTCAGTTCGATGGAACCTGCAAACATTGGAGGACTCACACAAATGGGTTGGTCTTTAA 1542 42.93 NLISEKLPSGWPLPAVLARVGISARFGEFLIILQLGFDLDILVASVQMGSTEEKTNYLSDEGTPLKSPPVAKNVSHSFDCETGPVRSSPDVTRWWKTNNIRIRPLRSAYIVLVRAKINVLLPFGPLAILLHYLTGKHGWVFFFTLLGIAPLAERLGYATEQLAFYTGPTVGGLLNATFGNATEMIISIYALKSGMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHHKVQVFNKGSAVVNSGLLLMAVMGTTFPAVLHFTHTELHSGESALSLSRFSSCIMLIAYASYLFFQLKSQQDLYGPLDEVVEDEVEDDSEIYAWEAIGWLAILTVWVSILSGYLVDAIQGASESLNLPVAFISVILLPIVGNAAEHASAIMFAMKDKLDITLGVAIGSSTQISMFVIPFCVVVGWCMGEPMDLNFKLFETATLFITVLVVAFMLQEGTSNYFKGLMLILCYLIVAASFFIMTNPRSKYVPGNLLQPEPLHCIGSQTTIASVRWNLQTLEDSHKWVGL 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8471808 8475518 - Cp4.1LG03g14750.1 Cpe03g01039 466756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01039 513 Pfam Sodium/calcium exchanger protein 323 462 IPR004837 GO:0016021|GO:0055085
Cpe03g01039 513 Pfam Sodium/calcium exchanger protein 139 293 IPR004837 GO:0016021|GO:0055085
Cpe03g01039 513 Gene3D - 168 308 IPR044880 -
Cpe03g01039 513 Gene3D - 309 466 IPR044880 -
Cpe03g01039 513 PANTHER VACUOLAR CATION/PROTON EXCHANGER 52 482 - -
Cpe03g01039 513 TIGRFAM cax: calcium/proton exchanger 120 465 IPR004798 GO:0006816|GO:0015369
Cpe03g01039 513 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 52 482 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cpe03g01039 513 TIGRFAM caca2: calcium/proton exchanger 111 465 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01039 Cpe-Chr3:8471808 Cpe05g01322 Cpe-Chr5:9283872 0 dispersed
Cpe03g01039 Cpe-Chr3:8471808 Cpe02g01752 Cpe-Chr2:14286057 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01039 K07300 - csv:101219432 784.252