Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01040 ATGAGACCGCTCCAGCCGCCACAGGGTGTGAATCCGACCACCGATCGTCCTCGTCGCCGTCCCAATCTAACTCTTCCTCTTCCGCAGCGGGACAATACGTCTTTGGCGATGGGCCGAGAGGTCAAGATCCTTCGCGACGTTGACAATCCCTATGTGGTCAAGTGCCATGATATGTTCGATCATAACGGGGAAATCCAGGTTCTCCTTGAGTACATGGATCGGGGCTCTTTGGAAGGAACGCATATCCCTCAGGAGCACCATCTCTCTGATTTGGCTCGCCAGATTCTTAGTGGCCTCGCCTATCTCCATAGCCGCCGCATCGTCCATCGCGACATCAAGCCTTCGAATCTCCTCATCAATTCCCGAAGGCAGGTTAAGATCGCTGATTTCGGCGTCGGTCGAATCTTGGAACAGACTATGGATCCTTGCAATTCCTCGGTTGGAACTATTGCGTACATGAGCCCTGAGAGAATCAATTCCGATCTAAATCAGGGCCAGTACAATGGCTATGCTGGGGACATTTGGAGCTTTGGGGTTAGCATATTGGAATTCTATCTCGGACGGTTTCCTCTCGCTGTCGAGAGGCCTGGGGATTGGGCGAGCTTGATGTGCGCTATATGTATGGCTCAGCCACCGGAGGCGCCGCCAACTGCTTCGTCGGAGTTTCGCCACTTCATTGCCTGTTGTTTGCAGAGAGAGGCTCGGAGAAGATGGACTGCAGCTGCATTACTGGAACATCCGTTCATAACGACGAAAAATGGAGCGAATCAATACCAGAATCAGCCGGCTCATCACCAGAATCTTCGTCAACTGTTACCTCCTCCGCCCCTTCATCCTTCCAGCCTTTCC 849 52.89 MRPLQPPQGVNPTTDRPRRRPNLTLPLPQRDNTSLAMGREVKILRDVDNPYVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPQEHHLSDLARQILSGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVERPGDWASLMCAICMAQPPEAPPTASSEFRHFIACCLQREARRRWTAAALLEHPFITTKNGANQYQNQPAHHQNLRQLLPPPPLHPSSLS 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8476797 8477943 - Cp4.1LG03g14840.1 Cpe03g01040 466757

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01040 283 SUPERFAMILY Protein kinase-like (PK-like) 37 267 IPR011009 -
Cpe03g01040 283 CDD PKc_MAPKK_plant_like 24 250 - -
Cpe03g01040 283 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 37 264 - -
Cpe03g01040 283 Pfam Protein kinase domain 35 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g01040 283 ProSiteProfiles Protein kinase domain profile. 1 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g01040 283 Gene3D Phosphorylase Kinase; domain 1 24 73 - -
Cpe03g01040 283 Gene3D Transferase(Phosphotransferase) domain 1 75 271 - -
Cpe03g01040 283 ProSitePatterns Serine/Threonine protein kinases active-site signature. 107 119 IPR008271 GO:0004672|GO:0006468
Cpe03g01040 283 MobiDBLite consensus disorder prediction 1 31 - -
Cpe03g01040 283 SMART serkin_6 8 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g01040 283 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 37 264 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01040 K13413 MKK4_5; mitogen-activated protein kinase kinase 4/5 [EC:2.7.12.2] - csv:101219669 461.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01040 Cpe-Chr3:8476797 Cpe20g00165 Cpe-Chr20:929013 3.62E-81 dispersed
Cpe02g01751 Cpe-Chr2:14284672 Cpe03g01040 Cpe-Chr3:8476797 2.24E-15 wgd
Cpe03g01040 Cpe-Chr3:8476797 Cpe07g01073 Cpe-Chr7:9515287 7.78E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g955 . . . . . . Bma10g00703 . . . . . . Car14g01085 . . . . . . . . . . Cla07g01350 Cam07g1143 Cec07g1538 Cco07g1499 Clacu07g1422 Cmu07g1398 Cre07g1779 Cone20ag1378 . . . . . . . . . . . . . . . . . . . . . . . Cpe03g01040 . . . . . . . . . . . . . . Lsi07g00631 Csa03g02812 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe18g00340 CST 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.8 5.8e-136 481.1
Cpe04g01040 CST 121 444 MAP Kinase Kinase Gene Family AT4G26070 67.6 3.1e-129 458.8
Cpe07g01073 . 67 391 MAP Kinase Kinase Gene Family AT4G26070 67.8 2.9e-127 452.2
Cpe07g01036 . 26 349 MAP Kinase Kinase Gene Family AT4G26070 55.7 2.5e-107 386.0
Cpe11g01143 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 54.7 9.6e-107 384.0
Cpe18g00340 CST 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.6 7.0e-134 474.2
Cpe04g01040 CST 121 417 MAP Kinase Kinase Gene Family AT4G29810 69.7 1.5e-123 439.9
Cpe07g01073 . 41 365 MAP Kinase Kinase Gene Family AT4G29810 63.1 8.6e-116 414.1
Cpe07g01036 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.7 8.4e-111 397.5
Cpe11g01143 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 58.2 1.7e-108 389.8
Cpe03g00581 . 36 497 MAP Kinase Kinase Gene Family AT5G40440 76.4 3.2e-215 745.0
Cpe02g01751 . 1 371 MAP Kinase Kinase Gene Family AT1G51660 69.2 5.8e-126 448.0
Cpe03g01040 . 1 281 MAP Kinase Kinase Gene Family AT1G51660 56.9 2.0e-102 369.8
Cpe20g00165 . 48 317 MAP Kinase Kinase Gene Family AT1G51660 54.8 1.8e-82 303.5
Cpe09g01104 . 31 308 MAP Kinase Kinase Gene Family AT1G51660 54.3 1.2e-81 300.8
Cpe02g01751 . 1 371 MAP Kinase Kinase Gene Family AT3G21220 68.0 5.0e-127 451.4
Cpe03g01040 . 1 281 MAP Kinase Kinase Gene Family AT3G21220 56.0 1.7e-103 373.2
Cpe20g00165 . 48 313 MAP Kinase Kinase Gene Family AT3G21220 54.9 1.2e-83 307.4
Cpe09g01104 . 35 304 MAP Kinase Kinase Gene Family AT3G21220 54.8 4.9e-82 302.0
Cpe11g01143 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 83.4 6.4e-170 594.0
Cpe07g01036 . 1 349 MAP Kinase Kinase Gene Family AT5G56580 83.7 7.1e-169 590.5
Cpe18g00340 CST 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.4 3.0e-119 425.6
Cpe04g01040 CST 121 443 MAP Kinase Kinase Gene Family AT5G56580 57.7 1.3e-109 393.7
Cpe07g01073 . 41 380 MAP Kinase Kinase Gene Family AT5G56580 56.4 3.5e-107 385.6
Cpe20g00165 . 1 311 MAP Kinase Kinase Gene Family AT1G18350 62.8 3.0e-107 385.6
Cpe09g01104 . 1 302 MAP Kinase Kinase Gene Family AT1G18350 64.4 2.1e-105 379.4
Cpe02g01751 . 79 338 MAP Kinase Kinase Gene Family AT1G18350 52.8 2.7e-76 282.7
Cpe03g01040 . 37 249 MAP Kinase Kinase Gene Family AT1G18350 55.0 2.8e-65 246.1
Cpe20g00165 . 1 299 MAP Kinase Kinase Gene Family AT3G06230 50.5 2.5e-79 292.7
Cpe09g01104 . 1 290 MAP Kinase Kinase Gene Family AT3G06230 50.5 1.8e-77 286.6
Cpe20g00165 . 1 311 MAP Kinase Kinase Gene Family AT1G73500 66.3 1.7e-113 406.4
Cpe09g01104 . 1 302 MAP Kinase Kinase Gene Family AT1G73500 66.1 5.9e-111 397.9
Cpe02g01751 . 79 338 MAP Kinase Kinase Gene Family AT1G73500 52.8 1.5e-77 287.0
Cpe03g01040 . 39 249 MAP Kinase Kinase Gene Family AT1G73500 55.6 3.4e-66 249.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009405 0 1 0 1 0 1 2 1 1 1 1 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62293 PF00069 Pkinase 2.00E-50 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01040 Cpe_Chr03 FPKM 55.223076 49.430996 16.489122 16.072077 25.356394 23.928991 23.558826 8.906866 9.096416 10.280515