Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01040 ATGAGACCGCTCCAGCCGCCACAGGGTGTGAATCCGACCACCGATCGTCCTCGTCGCCGTCCCAATCTAACTCTTCCTCTTCCGCAGCGGGACAATACGTCTTTGGCGATGGGCCGAGAGGTCAAGATCCTTCGCGACGTTGACAATCCCTATGTGGTCAAGTGCCATGATATGTTCGATCATAACGGGGAAATCCAGGTTCTCCTTGAGTACATGGATCGGGGCTCTTTGGAAGGAACGCATATCCCTCAGGAGCACCATCTCTCTGATTTGGCTCGCCAGATTCTTAGTGGCCTCGCCTATCTCCATAGCCGCCGCATCGTCCATCGCGACATCAAGCCTTCGAATCTCCTCATCAATTCCCGAAGGCAGGTTAAGATCGCTGATTTCGGCGTCGGTCGAATCTTGGAACAGACTATGGATCCTTGCAATTCCTCGGTTGGAACTATTGCGTACATGAGCCCTGAGAGAATCAATTCCGATCTAAATCAGGGCCAGTACAATGGCTATGCTGGGGACATTTGGAGCTTTGGGGTTAGCATATTGGAATTCTATCTCGGACGGTTTCCTCTCGCTGTCGAGAGGCCTGGGGATTGGGCGAGCTTGATGTGCGCTATATGTATGGCTCAGCCACCGGAGGCGCCGCCAACTGCTTCGTCGGAGTTTCGCCACTTCATTGCCTGTTGTTTGCAGAGAGAGGCTCGGAGAAGATGGACTGCAGCTGCATTACTGGAACATCCGTTCATAACGACGAAAAATGGAGCGAATCAATACCAGAATCAGCCGGCTCATCACCAGAATCTTCGTCAACTGTTACCTCCTCCGCCCCTTCATCCTTCCAGCCTTTCC 849 52.89 MRPLQPPQGVNPTTDRPRRRPNLTLPLPQRDNTSLAMGREVKILRDVDNPYVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPQEHHLSDLARQILSGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVERPGDWASLMCAICMAQPPEAPPTASSEFRHFIACCLQREARRRWTAAALLEHPFITTKNGANQYQNQPAHHQNLRQLLPPPPLHPSSLS 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8476797 8477943 - Cp4.1LG03g14840.1 Cpe03g01040 466757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01040 283 SUPERFAMILY Protein kinase-like (PK-like) 37 267 IPR011009 -
Cpe03g01040 283 CDD PKc_MAPKK_plant_like 24 250 - -
Cpe03g01040 283 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 37 264 - -
Cpe03g01040 283 Pfam Protein kinase domain 35 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g01040 283 ProSiteProfiles Protein kinase domain profile. 1 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g01040 283 Gene3D Phosphorylase Kinase; domain 1 24 73 - -
Cpe03g01040 283 Gene3D Transferase(Phosphotransferase) domain 1 75 271 - -
Cpe03g01040 283 ProSitePatterns Serine/Threonine protein kinases active-site signature. 107 119 IPR008271 GO:0004672|GO:0006468
Cpe03g01040 283 MobiDBLite consensus disorder prediction 1 31 - -
Cpe03g01040 283 SMART serkin_6 8 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g01040 283 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 37 264 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01040 Cpe-Chr3:8476797 Cpe20g00165 Cpe-Chr20:929013 3.62E-81 dispersed
Cpe02g01751 Cpe-Chr2:14284672 Cpe03g01040 Cpe-Chr3:8476797 2.24E-15 wgd
Cpe03g01040 Cpe-Chr3:8476797 Cpe07g01073 Cpe-Chr7:9515287 7.78E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62293 PF00069 Pkinase 2.00E-50 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01040 K13413 - csv:101219669 461.07