Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01046 ATGAATTCAAGTCCAAAGACCTGCACCACCTCTCCTTTCACACCAACTCAATGGCAAGAACTAGAACACCAAGCTTTGATCTTCAAATACATGGTTTCAGGAGTACCAATCCCTCCTGATCTAATCTTCTCTGTGAAAAGAAGCTTGGATTCCTCCCTTTCTGCAAGACTTTTCCCTCACCAACCCATTGGGTGGGGGTGTTTTGAGATGGGTTTTGGCAGAAAAACAGACCCAGAACCAGGAAGGTGTAGAAGAACAGATGGCAAAAAATGGAGATGCTCAAAAGAAGCTTTTCCAGACTCCAAATACTGCGAGAAACACATGCATAGAGGCAGAAATCGTTCAAGAAAGCCTGTGGAAATCTCTTCTTCCTCTTCTTCTTCTTCTTCTTCCTCTTCAATGACCTGTGAAACTCAATCATATCACCAAGCTCCTCCTCCTGCTGCTGCTGCTTATCATGAATCCTCCATTCATCCATTTATGTATACTCAATCTTCCTCCTCCAGACCTCCCTGCTCTGATTTCTCTTCAAATAATTCAAACCCTCAACTCTTTTTGTACTCAGGGACTCATTCTCAAGCTGATAAAGATTACAGTAGGGATATTAATGGTTCAAGAGAGGGCGTTGGCGTGCAGGCTTTCTTTCCCTCGGTTGCTGAGGTTTATAATAATCAGCAGCCAATAGCGATGGATTCTTACAAAGGATGCTCCCAATTTGTTACTCAAAGCCACCAAATTTACAATTCTAAACAGACAAGGCAAGAACAAGAGCAACACTGCTTTGTTTTGGGCACAGATTTCAATAAATCGTCAAAATCAGCTAAAGCAGAGGAAGAAGAACAAGAACAAGAACAAGATGGTGAAACCCAGAAGCCGCTACTCCATTTCTTTGAGGATTGCCCACCAAAAAATTCGGATTCCTGGCTTGATTTAGCCTCAAATTCAAGTATACAAAATGGAAATTTTATTGGGTTATGA 978 41.82 MNSSPKTCTTSPFTPTQWQELEHQALIFKYMVSGVPIPPDLIFSVKRSLDSSLSARLFPHQPIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAFPDSKYCEKHMHRGRNRSRKPVEISSSSSSSSSSSSMTCETQSYHQAPPPAAAAYHESSIHPFMYTQSSSSRPPCSDFSSNNSNPQLFLYSGTHSQADKDYSRDINGSREGVGVQAFFPSVAEVYNNQQPIAMDSYKGCSQFVTQSHQIYNSKQTRQEQEQHCFVLGTDFNKSSKSAKAEEEEQEQEQDGETQKPLLHFFEDCPPKNSDSWLDLASNSSIQNGNFIGL 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8513101 8515294 + Cp4.1LG03g14640.1 Cpe03g01046 466763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01046 325 Pfam QLQ 12 45 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cpe03g01046 325 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Cpe03g01046 325 PANTHER GROWTH-REGULATING FACTOR 5 5 137 - -
Cpe03g01046 325 PANTHER GROWTH-REGULATING FACTOR 5 126 319 - -
Cpe03g01046 325 PANTHER - 5 137 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cpe03g01046 325 PANTHER - 126 319 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cpe03g01046 325 ProSiteProfiles QLQ domain profile. 12 47 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cpe03g01046 325 MobiDBLite consensus disorder prediction 104 150 - -
Cpe03g01046 325 Pfam WRC 78 120 IPR014977 -
Cpe03g01046 325 SMART QLQ_2 11 47 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cpe03g01046 325 MobiDBLite consensus disorder prediction 271 296 - -
Cpe03g01046 325 MobiDBLite consensus disorder prediction 118 142 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g01745 Cpe03g01046 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01046 Cpe-Chr3:8513101 Cpe04g01028 Cpe-Chr4:9123274 6.89E-72 dispersed
Cpe11g01195 Cpe-Chr11:9762295 Cpe03g01046 Cpe-Chr3:8513101 4.88E-65 wgd
Cpe02g01745 Cpe-Chr2:14257197 Cpe03g01046 Cpe-Chr3:8513101 1.03E-175 wgd
Cpe03g01046 Cpe-Chr3:8513101 Cpe07g01065 Cpe-Chr7:9480069 2.17E-24 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49228 PF08879 WRC 9.80E-22 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01046 - - csv:101205529 507.294