Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01057 ATGGGAAACCAGAAGTTAAAGTGGACATCGGAGGAGGAAGAGGCACTTTTGGCAGGCGTGAATAAGCACGGTCCCGGAAAGTGGAAGAACATTCTTAAAGATCCTGAGTTTGCTCCGTCTCTCACTCATCGCTCTAACATTGACCTCAAGGACAAATGGCGTAATTTGAGTGTCAGTACTGCTTCACAAGGCTCAAAAGAGAAGTCTAGGGCTCCTAAAGCAAAAGCTATCGTTGCTGCTATTTCTAACCACCAAAACTCTGCTCCTGCTAAGTTTAATGCATCTGCTGATACTGCAGGGGACGATACACCAAACAACAGCACACAAGATGGAAAAAATGTCCCAAGGTATTATACAATGATTTTTGAAGCCCTTTCAACCATAAAAGATTCAAATGGATGTGACATAGGTACAATTGTTAACTTTATTAAGCAACGGCACGAGGTGCCACAAAACTTTAGAAGGCAATTAAGCTCAAAGTTGAGGAGGCTTGTTTCACAAGGAAAGCTCGAAAAGGTTCAGAATTGCTACCAGGTAAAGAAAGACAATTCATTGGCAGTTAATACTCCTACTCCCAAACAAAAAGATGTCAGGCAACGGATATCACAATATACCATGGGAGGGGGGATGCCATCAGGGGGGGACACGTTGGAAGACGCGGCGAAAGCGGCGGCCTACAAAGTTGCTGATGCAGAGAACAAATCTTTCTTAGCTGCAGAAGCTGTCAAGGAAGCAGAGAGAATTGCAAAGATGGCAGAAGATACAGATTCAATGCTACAGATTATAAAAGAGATATATGAAAAATGTAAGTGA 813 42.93 MGNQKLKWTSEEEEALLAGVNKHGPGKWKNILKDPEFAPSLTHRSNIDLKDKWRNLSVSTASQGSKEKSRAPKAKAIVAAISNHQNSAPAKFNASADTAGDDTPNNSTQDGKNVPRYYTMIFEALSTIKDSNGCDIGTIVNFIKQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYQVKKDNSLAVNTPTPKQKDVRQRISQYTMGGGMPSGGDTLEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQIIKEIYEKCK 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8747520 8759110 - Cp4.1LG03g14490.1 Cpe03g01057 466774

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01057 270 Gene3D - 110 197 IPR036388 -
Cpe03g01057 270 SMART sant 4 59 IPR001005 -
Cpe03g01057 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Cpe03g01057 270 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Cpe03g01057 270 CDD SANT_TRF 7 56 - -
Cpe03g01057 270 SUPERFAMILY Winged helix DNA-binding domain 110 189 IPR036390 -
Cpe03g01057 270 SUPERFAMILY Homeodomain-like 3 59 IPR009057 -
Cpe03g01057 270 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 269 - -
Cpe03g01057 270 Pfam linker histone H1 and H5 family 115 174 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cpe03g01057 270 Pfam Myb-like DNA-binding domain 6 56 IPR001005 -
Cpe03g01057 270 PANTHER SINGLE MYB HISTONE 4 1 269 IPR044597 GO:0003691
Cpe03g01057 270 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 113 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cpe03g01057 270 MobiDBLite consensus disorder prediction 88 113 - -
Cpe03g01057 270 Gene3D - 8 87 - -
Cpe03g01057 270 SMART h15plus2 111 176 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01057 K09422 MYBP; transcription factor MYB, plant - csv:101202785 480.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01057 Cpe-Chr3:8747520 Cpe14g00260 Cpe-Chr14:1500414 3.36E-33 dispersed
Cpe02g01732 Cpe-Chr2:14178581 Cpe03g01057 Cpe-Chr3:8747520 4.11E-163 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe14g00260 CST 1 248 Single Myb Histone (SMH) Gene Family AT1G49950 57.6 8.6e-67 251.1
Cpe10g00484 . 20 266 Single Myb Histone (SMH) Gene Family AT1G49950 53.5 4.4e-63 238.8
Cpe01g00396 CST 1 232 Single Myb Histone (SMH) Gene Family AT1G49950 55.6 1.3e-59 227.3
Cpe10g00484 . 20 266 Single Myb Histone (SMH) Gene Family AT5G67580 54.0 2.5e-66 249.6
Cpe10g00484 . 20 266 Single Myb Histone (SMH) Gene Family AT3G49850 50.2 6.1e-57 218.4
Cpe03g01057 . 1 269 Single Myb Histone (SMH) Gene Family AT1G17520 51.7 1.7e-67 253.4
Cpe02g01732 . 1 272 Single Myb Histone (SMH) Gene Family AT1G17520 51.4 2.2e-67 253.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013733 1 1 1 0 1 0 2 0 0 0 0 0 1 1 1 2 0 2 1 0 0 0 1 1 1 0 1 4 2 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49231 PF00538 Linker_histone 1.50E-10 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01057 Cpe_Chr03 FPKM 6.025854 5.863931 7.719156 8.131162 11.26591 10.807346 11.487321 18.889072 16.897221 19.429888