Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01057 ATGGGAAACCAGAAGTTAAAGTGGACATCGGAGGAGGAAGAGGCACTTTTGGCAGGCGTGAATAAGCACGGTCCCGGAAAGTGGAAGAACATTCTTAAAGATCCTGAGTTTGCTCCGTCTCTCACTCATCGCTCTAACATTGACCTCAAGGACAAATGGCGTAATTTGAGTGTCAGTACTGCTTCACAAGGCTCAAAAGAGAAGTCTAGGGCTCCTAAAGCAAAAGCTATCGTTGCTGCTATTTCTAACCACCAAAACTCTGCTCCTGCTAAGTTTAATGCATCTGCTGATACTGCAGGGGACGATACACCAAACAACAGCACACAAGATGGAAAAAATGTCCCAAGGTATTATACAATGATTTTTGAAGCCCTTTCAACCATAAAAGATTCAAATGGATGTGACATAGGTACAATTGTTAACTTTATTAAGCAACGGCACGAGGTGCCACAAAACTTTAGAAGGCAATTAAGCTCAAAGTTGAGGAGGCTTGTTTCACAAGGAAAGCTCGAAAAGGTTCAGAATTGCTACCAGGTAAAGAAAGACAATTCATTGGCAGTTAATACTCCTACTCCCAAACAAAAAGATGTCAGGCAACGGATATCACAATATACCATGGGAGGGGGGATGCCATCAGGGGGGGACACGTTGGAAGACGCGGCGAAAGCGGCGGCCTACAAAGTTGCTGATGCAGAGAACAAATCTTTCTTAGCTGCAGAAGCTGTCAAGGAAGCAGAGAGAATTGCAAAGATGGCAGAAGATACAGATTCAATGCTACAGATTATAAAAGAGATATATGAAAAATGTAAGTGA 813 42.93 MGNQKLKWTSEEEEALLAGVNKHGPGKWKNILKDPEFAPSLTHRSNIDLKDKWRNLSVSTASQGSKEKSRAPKAKAIVAAISNHQNSAPAKFNASADTAGDDTPNNSTQDGKNVPRYYTMIFEALSTIKDSNGCDIGTIVNFIKQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYQVKKDNSLAVNTPTPKQKDVRQRISQYTMGGGMPSGGDTLEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQIIKEIYEKCK 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8747520 8759110 - Cp4.1LG03g14490.1 Cpe03g01057 466774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01057 270 Gene3D - 110 197 IPR036388 -
Cpe03g01057 270 SMART sant 4 59 IPR001005 -
Cpe03g01057 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Cpe03g01057 270 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Cpe03g01057 270 CDD SANT_TRF 7 56 - -
Cpe03g01057 270 SUPERFAMILY Winged helix DNA-binding domain 110 189 IPR036390 -
Cpe03g01057 270 SUPERFAMILY Homeodomain-like 3 59 IPR009057 -
Cpe03g01057 270 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 269 - -
Cpe03g01057 270 Pfam linker histone H1 and H5 family 115 174 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cpe03g01057 270 Pfam Myb-like DNA-binding domain 6 56 IPR001005 -
Cpe03g01057 270 PANTHER SINGLE MYB HISTONE 4 1 269 IPR044597 GO:0003691
Cpe03g01057 270 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 113 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cpe03g01057 270 MobiDBLite consensus disorder prediction 88 113 - -
Cpe03g01057 270 Gene3D - 8 87 - -
Cpe03g01057 270 SMART h15plus2 111 176 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01057 Cpe-Chr3:8747520 Cpe14g00260 Cpe-Chr14:1500414 3.36E-33 dispersed
Cpe02g01732 Cpe-Chr2:14178581 Cpe03g01057 Cpe-Chr3:8747520 4.11E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49231 PF00538 Linker_histone 1.50E-10 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01057 K09422 - csv:101202785 480.33