Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01066 ATGGAGGACACTATGTCCAATTTAACTTCAGCTTCTGGTGAACCCAGTGCCTGCTCCGGCAACCATTCCGATCACCTTCCGGCCAACTATTCCGGCCAGTATTTTTCAGCCCCACCACCAAAAAAGAAGAGAAACCTCCCCGGAAATCCAGACCCAGATGCCGAAGTGGTAGCTTTATCGCCGAAGACGCTGATGGCGACGAATCGATTCGTATGCGAGATCTGCAGCAAGGGGTTTCAGAGAGATCAGAATCTTCAGCTTCACAAAAGAGGGCACAATCTGCCATGGAAATTGAAGCAAAGAGCTAACAAAGAGGTTATAAGGAAGAAAGTTTATGTGTGTCCAGAAACAAGCTGTGTTCATCATGATCCATTGAGGGCTCTTGGGGACTTGACAGGAATCAAGAAGCACTTTTGTAGAAAGCATGGCGAGAAGAAATGGAAATGTGATAAGTGTTCTAAGAGGTACGCTGTTCAATCGGATTGGAAAGCTCATTCCAAGACTTGTGGCACTAGAGAGTACAGATGTGATTGTGGAACCCTTTTCTCGAGGAGGGATAGTTTCATCACCCACAGAGCTTTTTGTGATGCATTGGCAGAGGAAAGTGCAAGAGCCATTACTACATCAAACCCAAATAACAATCAAAACCTTCCCATTTCTTCATCAATCTCTCACTTAAACTTCCAAAATCCCTTAGATATCAACTCATTCTCTCTCAAAAAAGAGCACCAACAAATCCCAACCACCAACAATTTCACTATTCCCCCATGGTTAGGCTGTCCCAGCTCAAGATCATCACCATTACAAGATCATCAAAGCCTCATCATGATCAACAATGATCAAATTATGAACCCTAATAATCCTCTTCATCTAATTCCAAGCTCTTCCCCTTCTCCACACATGTCAGCCACAGCACTTCTTCAAAAAGCAGCTCAAATGGGAGCTACAATGAGCAATAGTAACAACAATGGTAACATCTCCTCCTCCTCCTCCTCACGTGACAATCATCATCAGATCTTGATGGCTGGCAGTGAAGGTGTAGGGGTTTCTCATGCTCTGCCACTCCACACGAACAAATCCAATAATTATAATGATTTTGAAGGGGCTTGTTTTGAATTAGAGAGATTTGGAGGGGGTTTTGAGAAAGATGAGATTTTTAAAGGCAGAAGTGATGAAGGGCTGAGTACAAGAGATTTCTTGGGGCTTAGAGCTATTTCTCACACTGAGTTTTTGAATAATATTGCGGCTGTTGGTTATAGTAACTGCATCAATGGCGGCGCTCCTCAAACTCCTCGAACTCAATTTCATAACCAACCTGGCTGGCAAGGTTAG 1332 43.69 MEDTMSNLTSASGEPSACSGNHSDHLPANYSGQYFSAPPPKKKRNLPGNPDPDAEVVALSPKTLMATNRFVCEICSKGFQRDQNLQLHKRGHNLPWKLKQRANKEVIRKKVYVCPETSCVHHDPLRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITTSNPNNNQNLPISSSISHLNFQNPLDINSFSLKKEHQQIPTTNNFTIPPWLGCPSSRSSPLQDHQSLIMINNDQIMNPNNPLHLIPSSSPSPHMSATALLQKAAQMGATMSNSNNNGNISSSSSSRDNHHQILMAGSEGVGVSHALPLHTNKSNNYNDFEGACFELERFGGGFEKDEIFKGRSDEGLSTRDFLGLRAISHTEFLNNIAAVGYSNCINGGAPQTPRTQFHNQPGWQG 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8815274 8818015 + Cp4.1LG03g14420.1 Cpe03g01066 466783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01066 443 MobiDBLite consensus disorder prediction 1 30 - -
Cpe03g01066 443 SUPERFAMILY beta-beta-alpha zinc fingers 69 167 IPR036236 -
Cpe03g01066 443 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Cpe03g01066 443 Pfam Zinc finger, C2H2 type 70 92 IPR013087 -
Cpe03g01066 443 Gene3D Classic Zinc Finger 49 119 - -
Cpe03g01066 443 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 7 340 - -
Cpe03g01066 443 SMART c2h2final6 70 92 IPR013087 -
Cpe03g01066 443 SMART c2h2final6 147 167 IPR013087 -
Cpe03g01066 443 SMART c2h2final6 112 142 IPR013087 -
Cpe03g01066 443 Gene3D Classic Zinc Finger 126 205 - -
Cpe03g01066 443 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Cpe03g01066 443 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 340 - -
Cpe03g01066 443 MobiDBLite consensus disorder prediction 1 55 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01066 Cpe-Chr3:8815274 Cpe08g01104 Cpe-Chr8:8347530 5.40E-115 dispersed
Cpe19g00802 Cpe-Chr19:6041014 Cpe03g01066 Cpe-Chr3:8815274 1.32E-104 dispersed
Cpe02g00263 Cpe-Chr2:1362081 Cpe03g01066 Cpe-Chr3:8815274 3.22E-113 transposed
Cpe12g00615 Cpe-Chr12:6100750 Cpe03g01066 Cpe-Chr3:8815274 6.40E-135 wgd
Cpe17g00479 Cpe-Chr17:3563821 Cpe03g01066 Cpe-Chr3:8815274 5.74E-128 wgd
Cpe02g01726 Cpe-Chr2:14127921 Cpe03g01066 Cpe-Chr3:8815274 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49232 PF00096 zf-C2H2 0.014 CL0361 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01066 K25870 - csv:101204728 571.622