Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe03g01066 | ATGGAGGACACTATGTCCAATTTAACTTCAGCTTCTGGTGAACCCAGTGCCTGCTCCGGCAACCATTCCGATCACCTTCCGGCCAACTATTCCGGCCAGTATTTTTCAGCCCCACCACCAAAAAAGAAGAGAAACCTCCCCGGAAATCCAGACCCAGATGCCGAAGTGGTAGCTTTATCGCCGAAGACGCTGATGGCGACGAATCGATTCGTATGCGAGATCTGCAGCAAGGGGTTTCAGAGAGATCAGAATCTTCAGCTTCACAAAAGAGGGCACAATCTGCCATGGAAATTGAAGCAAAGAGCTAACAAAGAGGTTATAAGGAAGAAAGTTTATGTGTGTCCAGAAACAAGCTGTGTTCATCATGATCCATTGAGGGCTCTTGGGGACTTGACAGGAATCAAGAAGCACTTTTGTAGAAAGCATGGCGAGAAGAAATGGAAATGTGATAAGTGTTCTAAGAGGTACGCTGTTCAATCGGATTGGAAAGCTCATTCCAAGACTTGTGGCACTAGAGAGTACAGATGTGATTGTGGAACCCTTTTCTCGAGGAGGGATAGTTTCATCACCCACAGAGCTTTTTGTGATGCATTGGCAGAGGAAAGTGCAAGAGCCATTACTACATCAAACCCAAATAACAATCAAAACCTTCCCATTTCTTCATCAATCTCTCACTTAAACTTCCAAAATCCCTTAGATATCAACTCATTCTCTCTCAAAAAAGAGCACCAACAAATCCCAACCACCAACAATTTCACTATTCCCCCATGGTTAGGCTGTCCCAGCTCAAGATCATCACCATTACAAGATCATCAAAGCCTCATCATGATCAACAATGATCAAATTATGAACCCTAATAATCCTCTTCATCTAATTCCAAGCTCTTCCCCTTCTCCACACATGTCAGCCACAGCACTTCTTCAAAAAGCAGCTCAAATGGGAGCTACAATGAGCAATAGTAACAACAATGGTAACATCTCCTCCTCCTCCTCCTCACGTGACAATCATCATCAGATCTTGATGGCTGGCAGTGAAGGTGTAGGGGTTTCTCATGCTCTGCCACTCCACACGAACAAATCCAATAATTATAATGATTTTGAAGGGGCTTGTTTTGAATTAGAGAGATTTGGAGGGGGTTTTGAGAAAGATGAGATTTTTAAAGGCAGAAGTGATGAAGGGCTGAGTACAAGAGATTTCTTGGGGCTTAGAGCTATTTCTCACACTGAGTTTTTGAATAATATTGCGGCTGTTGGTTATAGTAACTGCATCAATGGCGGCGCTCCTCAAACTCCTCGAACTCAATTTCATAACCAACCTGGCTGGCAAGGTTAG | 1332 | 43.69 | MEDTMSNLTSASGEPSACSGNHSDHLPANYSGQYFSAPPPKKKRNLPGNPDPDAEVVALSPKTLMATNRFVCEICSKGFQRDQNLQLHKRGHNLPWKLKQRANKEVIRKKVYVCPETSCVHHDPLRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITTSNPNNNQNLPISSSISHLNFQNPLDINSFSLKKEHQQIPTTNNFTIPPWLGCPSSRSSPLQDHQSLIMINNDQIMNPNNPLHLIPSSSPSPHMSATALLQKAAQMGATMSNSNNNGNISSSSSSRDNHHQILMAGSEGVGVSHALPLHTNKSNNYNDFEGACFELERFGGGFEKDEIFKGRSDEGLSTRDFLGLRAISHTEFLNNIAAVGYSNCINGGAPQTPRTQFHNQPGWQG | 443 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 8815274 | 8818015 | + | Cp4.1LG03g14420.1 | Cpe03g01066 | 466783 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe03g01066 | 443 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Cpe03g01066 | 443 | SUPERFAMILY | beta-beta-alpha zinc fingers | 69 | 167 | IPR036236 | - | |
Cpe03g01066 | 443 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 72 | 92 | IPR013087 | - | |
Cpe03g01066 | 443 | Pfam | Zinc finger, C2H2 type | 70 | 92 | IPR013087 | - | |
Cpe03g01066 | 443 | Gene3D | Classic Zinc Finger | 49 | 119 | - | - | |
Cpe03g01066 | 443 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 7 | 7 | 340 | - | - | |
Cpe03g01066 | 443 | SMART | c2h2final6 | 70 | 92 | IPR013087 | - | |
Cpe03g01066 | 443 | SMART | c2h2final6 | 147 | 167 | IPR013087 | - | |
Cpe03g01066 | 443 | SMART | c2h2final6 | 112 | 142 | IPR013087 | - | |
Cpe03g01066 | 443 | Gene3D | Classic Zinc Finger | 126 | 205 | - | - | |
Cpe03g01066 | 443 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 70 | 92 | IPR013087 | - | |
Cpe03g01066 | 443 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 7 | 340 | - | - | |
Cpe03g01066 | 443 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g01066 | Cpe-Chr3:8815274 | Cpe08g01104 | Cpe-Chr8:8347530 | 5.40E-115 | dispersed | |
Cpe19g00802 | Cpe-Chr19:6041014 | Cpe03g01066 | Cpe-Chr3:8815274 | 1.32E-104 | dispersed | |
Cpe02g00263 | Cpe-Chr2:1362081 | Cpe03g01066 | Cpe-Chr3:8815274 | 3.22E-113 | transposed | |
Cpe12g00615 | Cpe-Chr12:6100750 | Cpe03g01066 | Cpe-Chr3:8815274 | 6.40E-135 | wgd | |
Cpe17g00479 | Cpe-Chr17:3563821 | Cpe03g01066 | Cpe-Chr3:8815274 | 5.74E-128 | wgd | |
Cpe02g01726 | Cpe-Chr2:14127921 | Cpe03g01066 | Cpe-Chr3:8815274 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49232 | PF00096 | zf-C2H2 | 0.014 | CL0361 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe03g01066 | K25870 | - | csv:101204728 | 571.622 |