Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01085 ATGGCCGCCGCCGCTGCCGCCGCCAAGTTCCTCTTAGCTCTTCTCTCGGCGTCAGTGTTCTTTCCTTTGATTTCCGGCCAGAGTCCGTCAGGTTTTATCAGTTTAGACTGTGGAACTTCGCCGAACACTCGGTATATAGAGCCGATTAGTAGCATAAACTACGAGTCGGACGCGGCATTCATAAGCACCGGAACAATCCACAACATATCGTCGGTGTACGTAGGCAGCACGCGGTATGAACAGCTACGGAGCTTAAGAAGCTTTCCGGAGGGGGCGAGGAATTGCTACAGAGTGAGAGTGAAATCGGGGGCGAAGTATTTGATTCGGGCAAGCTTTCTGTACGGGGACTACGACGGGCAGGGAAAGGTTCCTGAGTTCGATCTCTACTTTGGACCAAACTTTTGGAGTTCTGTGAAATTAGAAGGCATGAACACGTCGGCGCATTATGAGATTATACACGTGGTATCGCGGGATTGGGTGGAGGTTTGTTTGGTTGATACGGGGACTGGAACGCCGTTCATCTCGGCGTTGGAGTTGAGGCCTTTGGTAAACTCCATTTATGAAACGAGATCGGAATCGCTTGCCACTTTTCTCCGCCTTGACGCCGGCTCTGCGGCAAACCTTTCTTACAGGTACAAAGACGATGTTTATGATCGAATATGGTACGCCATGGTTCCACTCGCAGCATGGACTAAGCTAACCACAACCGAGACCATAGACACCAACGACCCCGCCTCCTTCTTACCTCCTCAGCCGGTGATGACCTCCGCCGCGACGCCCAAAAACGCCACCGCTCCAATGGAATTCAACTGGATTCCGCCGGATGATACCACCAAGTTCTACGTCTACATGTATTTCACCGAGATTCAGAAGCTTCAACCCAACGAGTCCAGAGTGTTCAACATATTGCTGAATGGGAACCCCTGGACCGATGGGCAACTTTCCTTACCTTACTTACAAGGACTCGTCTACTACAGTACCAAACCCATCACAGGCGGGATTTACGATTTCGCCCTCGTTAGAACCCCTAATTCCACTCATCCCCCTCTCCTCAACGCCATTGAGATTTACAGGGTCATCGATTTCCCTCAATCTCCCACCGAACAGCAAGATGTTGAGGGCATTTTGGATATCAAGGCGTTTTATGGTGTTGGAAGAAACTGGCAAGGGGATCCTTGTGCGCCTACAGAGCTTATTTGGCGAGGTTTGAATTGTAGCTTTGTGGATTCCCAGCCTCCCAGAATCACATCCTTGGACTTATCCTCCAGTGGACTCACAGGGGAAATATCAGAAATTATAGCAAGTCTTAAAACGCTGGAGACTTTGGATCTATCAAATAATAGCTTGAATGGAAGCGTGCCTGATTTTCTCACTCAATTGCCATCATTGAGGGTCCTAAATTTAGAAAGAAACAACCTTTCTGGAGTTATTCCTTCCCAACTCCTTCAAAGCTCCAATGATGGTTCTTTATCCTTTAGCTATGGCGAAAATCCAAACCTGTTCATCAGCACATCTCCAAGTGAAAAGAAGGGGAAAAGCAACCCAGTTGTAGCTGTAGTAGCATCAGTTGGTGGGTTTGTTCTTCTTTTGTTCTTAATTTCAGGTGCCATTTTCTGGATCAAGACTAAACAGAGAAAGCAAGGTGCTGTGTTGGGAGAAGCAAAACAATGGGGCACAACAAAAAGATCATATTCTTATGAGGATATCTTGAGAATTACAAACAATTTTGAACGAACGCTTGGAGTAGGTGGCTTTGGAAAAGTCTACTATGGCAAAATCGATGCCACTGAAGTAGCTGTTAAGATGCTTTCGCCTCAATCAGTTCAAGGGTATGATCAGTTTGAAGCAGAGGTTGACCTTCTCCTAAGGGTTCATCATAGAAACTTGACTGGACTTGTTGGATATTGTGATGAATCAACCAAGAAAGGACTCATCTATGAATACATGGGAAAAGGGAACTTGGGATCTCTTATTTCAAGTAGGAAATCAATGGTTTTGAAGTGGGAAGATAGACTTCGTATAGCGCTGGATTCAGCACAAGGATTGGAGTACCTTCACTATGGTATCAAACCAGCAATGATTCATCGAGATGTAAAATCTTCAAACATATTATTGGACAACGATTTTCGGGCAAAAGTGTCGGATTTTGGACTGACAAGAGCTTTCGTAACAGAAAATGGTGTCTCTCATGTCACAGCCACAAATGTGGTCGGAACTTTTGGTTACATTGATCCAGAATACTACACTACGTCCCAATTAAACGAGAAAAGTGACGTTTTTGGATTTGGAGTGGTTATTCTAGAGATCATTACGGGAAAACCAGCTTTGATAAGAGGCGAAGGAGGTGAAGGCAATGTAGTTCATATCTATAATTGGGTCAATATGCTGCTTTCTCGAGGGGATATTCGATCCATTATCGACCCAAAAATGAAAGATTTCAACATAAACTCTGCTTGGAAAGCTGTAGATGTGGCAATGTCTTGTGTATCTACCAAATCTAAAGACAGGCCAAGTATGAGCCAAGTTGTGGTCGATTTGAAGGAATGTTTGGCCATGGAATCAGCTCGCAATAAGCCCCCTCGTCAAGCTGAGACAGGTGTTGCAGAATCAAGTACTCTGTTTGGTCCCTCAGCTAGGTAG 2640 45.53 MAAAAAAAKFLLALLSASVFFPLISGQSPSGFISLDCGTSPNTRYIEPISSINYESDAAFISTGTIHNISSVYVGSTRYEQLRSLRSFPEGARNCYRVRVKSGAKYLIRASFLYGDYDGQGKVPEFDLYFGPNFWSSVKLEGMNTSAHYEIIHVVSRDWVEVCLVDTGTGTPFISALELRPLVNSIYETRSESLATFLRLDAGSAANLSYRYKDDVYDRIWYAMVPLAAWTKLTTTETIDTNDPASFLPPQPVMTSAATPKNATAPMEFNWIPPDDTTKFYVYMYFTEIQKLQPNESRVFNILLNGNPWTDGQLSLPYLQGLVYYSTKPITGGIYDFALVRTPNSTHPPLLNAIEIYRVIDFPQSPTEQQDVEGILDIKAFYGVGRNWQGDPCAPTELIWRGLNCSFVDSQPPRITSLDLSSSGLTGEISEIIASLKTLETLDLSNNSLNGSVPDFLTQLPSLRVLNLERNNLSGVIPSQLLQSSNDGSLSFSYGENPNLFISTSPSEKKGKSNPVVAVVASVGGFVLLLFLISGAIFWIKTKQRKQGAVLGEAKQWGTTKRSYSYEDILRITNNFERTLGVGGFGKVYYGKIDATEVAVKMLSPQSVQGYDQFEAEVDLLLRVHHRNLTGLVGYCDESTKKGLIYEYMGKGNLGSLISSRKSMVLKWEDRLRIALDSAQGLEYLHYGIKPAMIHRDVKSSNILLDNDFRAKVSDFGLTRAFVTENGVSHVTATNVVGTFGYIDPEYYTTSQLNEKSDVFGFGVVILEIITGKPALIRGEGGEGNVVHIYNWVNMLLSRGDIRSIIDPKMKDFNINSAWKAVDVAMSCVSTKSKDRPSMSQVVVDLKECLAMESARNKPPRQAETGVAESSTLFGPSAR 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8964791 8972966 - Cp4.1LG03g14260.1 Cpe03g01085 466802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01085 879 PANTHER OS07G0107800 PROTEIN-RELATED 15 863 - -
Cpe03g01085 879 Pfam Protein tyrosine and serine/threonine kinase 576 846 IPR001245 GO:0004672|GO:0006468
Cpe03g01085 879 MobiDBLite consensus disorder prediction 854 879 - -
Cpe03g01085 879 ProSitePatterns Protein kinases ATP-binding region signature. 580 601 IPR017441 GO:0005524
Cpe03g01085 879 MobiDBLite consensus disorder prediction 864 879 - -
Cpe03g01085 879 Gene3D Ribonuclease Inhibitor 377 491 IPR032675 -
Cpe03g01085 879 PANTHER PUTATIVE-RELATED 15 863 - -
Cpe03g01085 879 ProSiteProfiles Protein kinase domain profile. 574 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g01085 879 SMART serkin_6 574 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g01085 879 Pfam Malectin-like domain 35 359 IPR024788 -
Cpe03g01085 879 PRINTS Leucine-rich repeat signature 439 452 - -
Cpe03g01085 879 PRINTS Leucine-rich repeat signature 460 473 - -
Cpe03g01085 879 Pfam Leucine rich repeat 413 473 IPR001611 GO:0005515
Cpe03g01085 879 SUPERFAMILY L domain-like 400 483 - -
Cpe03g01085 879 SUPERFAMILY Protein kinase-like (PK-like) 559 846 IPR011009 -
Cpe03g01085 879 Gene3D Transferase(Phosphotransferase) domain 1 649 869 - -
Cpe03g01085 879 ProSitePatterns Serine/Threonine protein kinases active-site signature. 693 705 IPR008271 GO:0004672|GO:0006468
Cpe03g01085 879 Gene3D Phosphorylase Kinase; domain 1 551 648 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01707 Cpe-Chr2:14010381 Cpe03g01085 Cpe-Chr3:8964791 9.90E-29 dispersed
Cpe03g01085 Cpe-Chr3:8964791 Cpe17g00523 Cpe-Chr17:4354724 0 dispersed
Cpe09g00565 Cpe-Chr9:3899379 Cpe03g01085 Cpe-Chr3:8964791 2.64E-137 dispersed
Cpe17g01101 Cpe-Chr17:8356990 Cpe03g01085 Cpe-Chr3:8964791 1.50E-114 dispersed
Cpe01g00216 Cpe-Chr1:1214418 Cpe03g01085 Cpe-Chr3:8964791 8.50E-20 transposed
Cpe05g00747 Cpe-Chr5:4581358 Cpe03g01085 Cpe-Chr3:8964791 2.16E-35 transposed
Cpe12g00412 Cpe-Chr12:2997925 Cpe03g01085 Cpe-Chr3:8964791 0 transposed
Cpe12g00639 Cpe-Chr12:6256575 Cpe03g01085 Cpe-Chr3:8964791 1.63E-09 wgd
Cpe17g00519 Cpe-Chr17:4333127 Cpe03g01085 Cpe-Chr3:8964791 4.74E-148 wgd
Cpe02g01703 Cpe-Chr2:13980417 Cpe03g01085 Cpe-Chr3:8964791 4.82E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62296 PF12819 Malectin_like 3.30E-108 CL0202 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01085 - - csv:101215468 1348.18