Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01090 ATGTCGTGGCAATCTTACATTGATGATCAGTTGATGTATGAGGTCGATGGTCAACATCTCAAAGCCGCTGCTATAGTTGGTAATGACGGTTCTGTTTGGGCTCAGAGCTCCGAATTCCCCCAGTACAAGCCAGAAGAGATTTCTGCCATTATGAAGGATTTTGATGAGCCTGGATCTCTTGCCCCGACTGGATTGTACCTTGCTGGATCGAAGTACATGGTTATCCAGGGGGAATCTGGAGCTGTTATCCGTGGAAAGAAGGGCACTTCTGGAATCACCGTAAAGAAAACAAACCAAGCACTGATATTTGGTTTATATGATGAACCCATGACTCCAGGACAGTGCAACATGATTGTTGAGAAGTTGGGAGATTACCTGATTGATCAAGGCATGTAA 396 44.95 MSWQSYIDDQLMYEVDGQHLKAAAIVGNDGSVWAQSSEFPQYKPEEISAIMKDFDEPGSLAPTGLYLAGSKYMVIQGESGAVIRGKKGTSGITVKKTNQALIFGLYDEPMTPGQCNMIVEKLGDYLIDQGM 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9000799 9002764 + Cp4.1LG03g14210.1 Cpe03g01090 466807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01090 131 CDD PROF 2 131 IPR005455 GO:0003779
Cpe03g01090 131 Pfam Profilin 1 131 IPR005455 GO:0003779
Cpe03g01090 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Cpe03g01090 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Cpe03g01090 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Cpe03g01090 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Cpe03g01090 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Cpe03g01090 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Cpe03g01090 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Cpe03g01090 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Cpe03g01090 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Cpe03g01090 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Cpe03g01090 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Cpe03g01090 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Cpe03g01090 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Cpe03g01090 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Cpe03g01090 131 SUPERFAMILY Profilin (actin-binding protein) 2 131 IPR036140 -
Cpe03g01090 131 PANTHER PROFILIN 1 131 IPR005455 GO:0003779
Cpe03g01090 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Cpe03g01090 131 SMART prof_2 1 131 IPR005455 GO:0003779
Cpe03g01090 131 PANTHER PROFILIN 1 131 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g01090 Cpe17g00524 CCT
Cpe03g01090 Cpe12g00643 CCT
Cpe03g01090 Cpe17g00524 ECH
Cpe03g01090 Cpe12g00643 ECH
Cpe02g01699 Cpe03g01090 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01090 Cpe-Chr3:9000799 Cpe11g01145 Cpe-Chr11:9479625 1.55E-77 dispersed
Cpe11g01144 Cpe-Chr11:9475430 Cpe03g01090 Cpe-Chr3:9000799 5.66E-62 wgd
Cpe12g00643 Cpe-Chr12:6305539 Cpe03g01090 Cpe-Chr3:9000799 1.77E-77 wgd
Cpe17g00524 Cpe-Chr17:4370964 Cpe03g01090 Cpe-Chr3:9000799 3.94E-77 wgd
Cpe02g01699 Cpe-Chr2:13966508 Cpe03g01090 Cpe-Chr3:9000799 7.29E-89 wgd
Cpe03g01090 Cpe-Chr3:9000799 Cpe07g01035 Cpe-Chr7:9318854 1.84E-70 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01090 K05759 - csv:101218089 257.299