Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe03g01092 | ATGGGGAAGGCAACGAGGTGGTTGAGGACGTTATTGGGGATGAAGAGAGAAAAGAACGCCGATCAGAATTCATGTGATAAAAGAGAGAAGAATCGCTGGAGTTTCTCCAAATCTGGGAAGGAATTCACTGGAAAAGTTCAGAATCTGCCACCGCCGCCGCCGAGAAAAGCGGTGGCCGACGCCGATTGGCAGAGATCCTATAATACAGAAACAGAGGAAGAGCGGAATGAGCATGCGATTGCCGTCGCCGCCGCGTCGGCTGCTGCTGCTGATGCAGCCATGGCGGCTGCTCAGGCGGCAGTGGCGGTTGTTAGGCTGACGAATCAAACCAGAGGAGGTGCTCTGTTCTATGGAGGGAATGAGATTATGGCGGCTCTTAAAATTCAAAACGTTTTCAGGGGATTTTTGGCAAGAAAGGCGCTACGAGCGTTAAGAGGATTGGTGAAATTACAAGCTTTAGTTAGAGGATTTCTCGTTCGAAAACGAGCTGCTGCAACTTTACAGAGCATGGAAGCTCTGTTCCGAGCACAAACCACCGTCCGATCACAGCGTGCTCGTAGTCGTTCCAATAACGAAGAGAACAAATCCCAACCGGAGAAGTCGGCGGACATCGACGTCAGATCCCTTTACTCCAACGAAATTGAAGACCCAAAAATCGTGGAAATCGACACACTCTTCAGAAGACCCAAATCAAGATCCCGTCGATTCAACAGCCTTCTCCCGGAGCTGGCGGACGACCGGGCATCGCCGTATCTCTGGACAATGGCGTCGCCGGCGAGATTCTCGGGAGGGGAGTGGTTTTTTGCGGGGGGAGAGGAATGTGGGCGGATGTCGACGCCGACGGCACATAGCACGCCACGAGTGGGGAACAGCGGGTGGGGGGCGGCGGCAGGGGTAGCGACGCCGACGAGGAGCGTGTATGGGGAGGGGTATTTTCGTGGATATTCGAATTATCCGAATTACATGGCGAGTACGCAGTCGTTTAAGGCGAAATTGAGGTCGCGAAGTGCGCCGAAACAGAGGCCGGAGGTGTGGACGAAGAAAAGGGCGGCGTGGAATGAGGTGATAGGGCCGAGAAACAGCATTAGCAGCGTTAGGATGCACAAAAGTAGCCGCGGAGAAGAAGAAGAAGGATTTTATGAACTGTGA | 1149 | 53.35 | MGKATRWLRTLLGMKREKNADQNSCDKREKNRWSFSKSGKEFTGKVQNLPPPPPRKAVADADWQRSYNTETEEERNEHAIAVAAASAAAADAAMAAAQAAVAVVRLTNQTRGGALFYGGNEIMAALKIQNVFRGFLARKALRALRGLVKLQALVRGFLVRKRAAATLQSMEALFRAQTTVRSQRARSRSNNEENKSQPEKSADIDVRSLYSNEIEDPKIVEIDTLFRRPKSRSRRFNSLLPELADDRASPYLWTMASPARFSGGEWFFAGGEECGRMSTPTAHSTPRVGNSGWGAAAGVATPTRSVYGEGYFRGYSNYPNYMASTQSFKAKLRSRSAPKQRPEVWTKKRAAWNEVIGPRNSISSVRMHKSSRGEEEEGFYEL | 382 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 9011328 | 9013364 | - | Cp4.1LG03g14090.1 | Cpe03g01092 | 466809 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe03g01092 | 382 | Pfam | Protein of unknown function (DUF4005) | 295 | 373 | IPR025064 | - | |
| Cpe03g01092 | 382 | MobiDBLite | consensus disorder prediction | 181 | 202 | - | - | |
| Cpe03g01092 | 382 | PANTHER | IQ-DOMAIN 5-RELATED | 1 | 373 | - | - | |
| Cpe03g01092 | 382 | SMART | iq_5 | 120 | 142 | IPR000048 | GO:0005515 | |
| Cpe03g01092 | 382 | SMART | iq_5 | 143 | 164 | IPR000048 | GO:0005515 | |
| Cpe03g01092 | 382 | Gene3D | - | 122 | 172 | - | - | |
| Cpe03g01092 | 382 | ProSiteProfiles | IQ motif profile. | 145 | 172 | IPR000048 | GO:0005515 | |
| Cpe03g01092 | 382 | Pfam | IQ calmodulin-binding motif | 123 | 142 | IPR000048 | GO:0005515 | |
| Cpe03g01092 | 382 | Pfam | IQ calmodulin-binding motif | 148 | 162 | IPR000048 | GO:0005515 | |
| Cpe03g01092 | 382 | MobiDBLite | consensus disorder prediction | 15 | 36 | - | - | |
| Cpe03g01092 | 382 | MobiDBLite | consensus disorder prediction | 186 | 202 | - | - | |
| Cpe03g01092 | 382 | PANTHER | - | 1 | 373 | - | - | |
| Cpe03g01092 | 382 | MobiDBLite | consensus disorder prediction | 15 | 58 | - | - | |
| Cpe03g01092 | 382 | ProSiteProfiles | IQ motif profile. | 121 | 149 | IPR000048 | GO:0005515 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe03g01092 | Cpe17g00525 | CCT | |
| Cpe03g01092 | Cpe12g00644 | CCT | |
| Cpe03g01092 | Cpe17g00525 | ECH | |
| Cpe03g01092 | Cpe12g00644 | ECH | |
| Cpe02g01697 | Cpe03g01092 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe03g01092 | Cpe-Chr3:9011328 | Cpe08g00280 | Cpe-Chr8:1807896 | 1.13E-34 | dispersed | |
| Cpe12g00644 | Cpe-Chr12:6309281 | Cpe03g01092 | Cpe-Chr3:9011328 | 3.22E-10 | wgd | |
| Cpe17g00525 | Cpe-Chr17:4376627 | Cpe03g01092 | Cpe-Chr3:9011328 | 6.82E-08 | wgd | |
| Cpe18g00396 | Cpe-Chr18:5187816 | Cpe03g01092 | Cpe-Chr3:9011328 | 7.06E-68 | wgd | |
| Cpe02g01697 | Cpe-Chr2:13961624 | Cpe03g01092 | Cpe-Chr3:9011328 | 1.95E-171 | wgd | |
| Cpe03g01092 | Cpe-Chr3:9011328 | Cpe04g01092 | Cpe-Chr4:9504874 | 2.72E-86 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe03g01092 | - | - | cmos:111457981 | 705.286 |