Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01111 ATGGATTTCTGGCCGGAATTTCTCGCTAACAGTTGGGGGAAAGAGTTCATAGCCGGCGGAATCGGCGGCATCGCCGGCATCGTCTCCGGCTACCCACTCGACACCCTTCGCATCCGACAGCAACACTCCACCTCTGGTTCCGCGATTAGCGTCCTCCGTAACATCATGTCTAACGGCGGCCCAGCTGCCCTCTACAGAGGAATGGGTGCTCCACTCGCTTCCGTCACTTTCCAGAACGCAATTGTTTTCCAAACCAACGCCGTGCTCTGCCGCGCGTTCGATCCGGCGGTAACGGACAACCGTCCACCGTCGTACAAGGCAGTAGCATTAGGCGGATTCGGCACCGGAGCATTACAGAGCCTAATTCTAACACCGGTGGAGCTCGTTAAGATCCGCCTTCAATTACAGGATCTGGGTTCATCGAGCCACTCAGATCTGGGTTCATCTCGGCTCGGGCCGATGCAGGTTGCGAAGAACATATTCAAAACCGAAGGCTACAAAGGGCTTTACAGAGGCTTAACAATCACAATGCTAAGAGACGCTCCATCTCATTGTTTTTACTTCTGGACATACGAATTCATGAGAGAAAAGCTTCATCCCGGTTGCAGGGAGTCCGGGCAAGAGACATTGAGAACGATGCTCGTCGCCGGCGGTTTAGCCGGCGTTGCCAGTTGGGTTTGTTGTTACCCACTGGATGTGGTTAAAACCAGACTCCAAGCTCAATCGAAAATGTCGTTTCAAAAGTACAGTGGAATTGTGGACTGTTTCTATAAGAGCGTGAAAGAAGAAGGGTACAGTGTGTTATGGCGGGGATTGGGAACCGCCATTGCAAGAGCTTTTGTGGTGAATGGAGCCATTTTTTCTGCTTATGAGCTGAGCTTGAGATGTCTGTCCAACAATGGAGGATTTCATGCTGAAAACACCATTTAA 930 51.29 MDFWPEFLANSWGKEFIAGGIGGIAGIVSGYPLDTLRIRQQHSTSGSAISVLRNIMSNGGPAALYRGMGAPLASVTFQNAIVFQTNAVLCRAFDPAVTDNRPPSYKAVALGGFGTGALQSLILTPVELVKIRLQLQDLGSSSHSDLGSSRLGPMQVAKNIFKTEGYKGLYRGLTITMLRDAPSHCFYFWTYEFMREKLHPGCRESGQETLRTMLVAGGLAGVASWVCCYPLDVVKTRLQAQSKMSFQKYSGIVDCFYKSVKEEGYSVLWRGLGTAIARAFVVNGAIFSAYELSLRCLSNNGGFHAENTI 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9141112 9142946 - Cp4.1LG03g13920.1 Cpe03g01111 466828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01111 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 208 296 IPR018108 -
Cpe03g01111 309 Gene3D Mitochondrial carrier domain 13 304 IPR023395 -
Cpe03g01111 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 92 IPR018108 -
Cpe03g01111 309 Coils Coil 309 309 - -
Cpe03g01111 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 197 IPR018108 -
Cpe03g01111 309 SUPERFAMILY Mitochondrial carrier 11 291 IPR023395 -
Cpe03g01111 309 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Cpe03g01111 309 PRINTS Mitochondrial carrier protein signature 118 136 IPR002067 GO:0055085
Cpe03g01111 309 PRINTS Mitochondrial carrier protein signature 170 188 IPR002067 GO:0055085
Cpe03g01111 309 PRINTS Mitochondrial carrier protein signature 217 239 IPR002067 GO:0055085
Cpe03g01111 309 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 1 298 - -
Cpe03g01111 309 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 1 298 - -
Cpe03g01111 309 Pfam Mitochondrial carrier protein 109 198 IPR018108 -
Cpe03g01111 309 Pfam Mitochondrial carrier protein 11 91 IPR018108 -
Cpe03g01111 309 Pfam Mitochondrial carrier protein 212 299 IPR018108 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g01111 Cpe12g00690 CCT
Cpe03g01111 Cpe17g00563 CCT
Cpe02g01678 Cpe03g01111 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01111 Cpe-Chr3:9141112 Cpe08g00856 Cpe-Chr8:6772543 5.98E-09 dispersed
Cpe12g00690 Cpe-Chr12:6562691 Cpe03g01111 Cpe-Chr3:9141112 1.91E-144 wgd
Cpe17g00563 Cpe-Chr17:4619591 Cpe03g01111 Cpe-Chr3:9141112 5.68E-149 wgd
Cpe02g01678 Cpe-Chr2:13881484 Cpe03g01111 Cpe-Chr3:9141112 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01111 K15109 - csv:101222749 577.015