Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe03g01159 | ATGACCGACATCAGCTTAGAGGAGATCAAGAATGAGAACGTCGATCTTGAGCGTATACCCGTTGAGGAAGTGTTTGAACAACTGAAATGTACCCGAGAGGGTTTGTCCTCAGAGGAGGGGCGCCAAAGGCTTCAACTCTTTGGCCCAAATAAGCTTGAAGAGAAGAAGGAAAGTAAATTTCTCAAGTTTCTGGGGTTTATGTGGAATCCACTTTCGTGGGTTATGGAAGCTGCTGCTATCATGGCGATTGTTCTTGCCAATGGAGGGGGGCAACCACCCGACTGGCAAGATTTTGTGGGAGATGTGATCAGCGTTAAGTTAGGAGATATCATTCCAGCCGATGCTCGTTTGTTGGAAGGCGATCCGCTGAAGATTGATCAGTCGGCACTTACCGGTGAGTCTTTACCAGTGACAAGGAGCTCTGGTGATGAAGTGTTTTCTGGTTCCACTGTAAAGCAAGGGGAGATCGAGGCTGTTGTAATTGCCACTGGTGTCCACACCTTCTTTGGGAAGGCTGCTCACTTGGTTGATAGCACAAATCAAGTGGGTCATTTCCAAAAGGTGTTGACTGCCATTGGAAACTTCTGCATTTGCTCCATCGCCGTAGGGATGGTGATAGAAATAGTAGTGATGTACCCAATTCAACATCGTAGATATCGAGATGGCTATCCCAGCAGGGTGCTATCACAAAGAGAATGA | 699 | 47.21 | MTDISLEEIKNENVDLERIPVEEVFEQLKCTREGLSSEEGRQRLQLFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIVLANGGGQPPDWQDFVGDVISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTRSSGDEVFSGSTVKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMVIEIVVMYPIQHRRYRDGYPSRVLSQRE | 232 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 9511861 | 9513586 | - | Cp4.1LG03g13510.1 | Cpe03g01159 | 466876 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe03g01159 | 232 | SMART | Cation_ATPase_N_a_2 | 15 | 87 | IPR004014 | - | |
| Cpe03g01159 | 232 | PANTHER | PLASMA MEMBRANE ATPASE | 100 | 223 | - | - | |
| Cpe03g01159 | 232 | PANTHER | PLASMA MEMBRANE ATPASE | 1 | 100 | - | - | |
| Cpe03g01159 | 232 | SUPERFAMILY | Calcium ATPase, transduction domain A | 81 | 176 | IPR008250 | - | |
| Cpe03g01159 | 232 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 1 | 100 | - | - | |
| Cpe03g01159 | 232 | Pfam | E1-E2 ATPase | 99 | 213 | - | - | |
| Cpe03g01159 | 232 | Pfam | Cation transporter/ATPase, N-terminus | 19 | 81 | IPR004014 | - | |
| Cpe03g01159 | 232 | Gene3D | - | 76 | 224 | - | - | |
| Cpe03g01159 | 232 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 14 | 221 | IPR023298 | - | |
| Cpe03g01159 | 232 | Gene3D | - | 80 | 163 | - | - | |
| Cpe03g01159 | 232 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 100 | 223 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe03g01159 | Cpe-Chr3:9511861 | Cpe18g00548 | Cpe-Chr18:6048594 | 3.07E-132 | dispersed | |
| Cpe02g01627 | Cpe-Chr2:13611946 | Cpe03g01159 | Cpe-Chr3:9511861 | 4.65E-142 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe03g01159 | K01535 | - | csv:101212751 | 403.29 |