Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01174 ATGGCTTCCATTTCCAACCTCTCCACTTCCATCTCTGCACCTTCTCTATCCTCTTCTGTTAACCCTCGATCTTCTATCTCCTCCAAGTCCTTCATCGCCTTCCGCCCCTCTTCCGATTTCTTCATCAAGGTCTCTGCGTCTAGATTGTCCGTTCGGAGAGGCTCCGATCTGAGGGGCTCCTTGGTTGTTAGGTGTTCCCAAGGGGATGGAAATGGAATCCCAATTAAGAGAACGGTGCTTCATGATCTCTATGAAAAGGAAGGCCAGTCTCCATGGTATGATAACCTCTGCCGCCCGGTCACCGACTTGCTTCCCCTTATTTCCAAGGGTGTCAGAGGTGTAACTAGCAACCCAGCAATTTTCCAGAAAGCAATTTCATCTTCAAATGCTTATAATGACCAATTCAGAGAACTTGTTCAGTCGGGAAAAGATATTGAAAGTGCATATTGGGAACTTGTGGTGAAGGATATTCAAGATGCATGCAAACTTTTTGAGCCTATCTATGATCAAACGGATGGTGGTGATGGCTATGTTTCAGTCGAAGTGTCTCCAATGCTTGCTGATGATACTGAAGGAACCGTTGAGGCTGCTAAGTGGCTCCACAAAGTCGTTAGCCGCCCAAATGTGTACATCAAGATCCCTGCTACTGCTGCTTGCATCCCATCAATTAGGGATACTATTGCTAATGGCATAAGTGTCAATGTGACTCTCATATTCTCCATTGCTCGATATGAGGCTGTCATTGATGCTTACTTGGATGGACTTGAAGCCTCAGGTCTAAGCGACCTTTCTAGAGTCACAAGTGTTGCTTCCTTCTTTGTAAGTCGGGTTGACACCCTTGTCGACAAATTGCTTGAGAAAATTGGAACGCCAGAGGCCCTCGATCTGCGAGGAAAGGCTGCAGTCGCTCAAGCCGCCCTTGCTTATCAGCTCTACCAGAAGAAGTTCTCAGGCCCAAGATGGGAGGCTCTCGTGAAGAAGGGAGCAAAGAAGCAAAGGTTGCTCTGGGCATCTACAAGCGTTAAGAACCCGGCATACCCCGACACCTTATACGTTGCCCCACTCATTGGACCCGACACTGTTTCAACCATGCCCGACCAAGCTCTCGAAGCATTCGTTGACCATGGAACTGTGTCAAGGACCATCGATTCAAACGTATCGGAGGCGGAAGGAATATACAGTGCACTTGAGAAGCTGGGAATCGACTGGAATGAAGTTGGGAATCAGCTTGAAGTTGAAGGAGTGGATTCATTCAAGAAGAGCTTTGAAAGCCTGCTGAATACTCTGCAAGACAAGGCCAACTCTCTTAAATTGGTGAGCCATTAA 1326 47.44 MASISNLSTSISAPSLSSSVNPRSSISSKSFIAFRPSSDFFIKVSASRLSVRRGSDLRGSLVVRCSQGDGNGIPIKRTVLHDLYEKEGQSPWYDNLCRPVTDLLPLISKGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIESAYWELVVKDIQDACKLFEPIYDQTDGGDGYVSVEVSPMLADDTEGTVEAAKWLHKVVSRPNVYIKIPATAACIPSIRDTIANGISVNVTLIFSIARYEAVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLVDKLLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWEALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALEAFVDHGTVSRTIDSNVSEAEGIYSALEKLGIDWNEVGNQLEVEGVDSFKKSFESLLNTLQDKANSLKLVSH 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9623005 9626179 + Cp4.1LG03g13350.1 Cpe03g01174 466891

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01174 441 MobiDBLite consensus disorder prediction 1 24 - -
Cpe03g01174 441 Pfam Transaldolase/Fructose-6-phosphate aldolase 106 428 IPR001585 GO:0005975
Cpe03g01174 441 PANTHER TRANSALDOLASE 1 441 IPR001585 GO:0005975
Cpe03g01174 441 CDD Transaldolase_like 90 424 IPR004732 GO:0004801|GO:0005737|GO:0006098
Cpe03g01174 441 ProSitePatterns Transaldolase signature 1. 113 121 IPR018225 GO:0005975
Cpe03g01174 441 TIGRFAM tal_mycobact: transaldolase 90 427 IPR004732 GO:0004801|GO:0005737|GO:0006098
Cpe03g01174 441 Gene3D Aldolase class I 78 433 IPR013785 -
Cpe03g01174 441 Hamap Transaldolase [tal]. 80 439 IPR004732 GO:0004801|GO:0005737|GO:0006098
Cpe03g01174 441 PIRSF Trnald_Bac_Plnt 69 441 IPR004732 GO:0004801|GO:0005737|GO:0006098
Cpe03g01174 441 PANTHER BNAA08G02750D PROTEIN 1 441 - -
Cpe03g01174 441 SUPERFAMILY Aldolase 86 432 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01174 K00616 E2.2.1.2, talA, talB; transaldolase [EC:2.2.1.2] - csv:101205302 798.505
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01174 Cpe-Chr3:9623005 Cpe08g00035 Cpe-Chr8:223142 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1358 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0644 Cone15ag0654 . . . . . . Blo02g00212 . . . Bpe14g00821 . . . . . . . . . . . Cpe03g01174 . . . . . . . . . . . . . . . . Chy07g01548 Cme07g01994
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007870 1 1 0 0 1 1 2 1 1 1 2 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01174 Cpe_Chr03 FPKM 1.868421 1.116093 2.241024 2.142008 3.61501 3.770945 4.555947 0.0 0.138481 0.0