Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01177 ATGGCGAATCAGGAAAATCTTGATGCAGATAGCAACGTGGAGTCTGTAATATCTATTCAAACATCAGATTACGATTGTTGGGGCAATTTGGGTGATGATGATATCCTGCAGCAGCAATCTGCAATTTTTGTTGAGGAAGCTGAGAAAGTTCCATTTGAACCACTCACTTCTTTAGAAGCTGAATATAAATCTGGAAGTCCCATTTTGCTGGAGAAAATTAAGGTGCTCAGTGGCCAATATATTGCCATTCGTCGAACACGTGGTGATGGGAACTGCTTTTTCCGCAGCTTCATGTTTTCGTATCTCGAACATATTTTAGAGTCGCAAGACAAAACTGAAGTTGATCGCATCAGAACAAATGTGGAAAATTGTAGGAAAACACTTCGAAGTTTGGGATATACAGAATTTACTTTTGAAGATTTTTTTGCGCTATTCCTTGAGCAGCTGGAAAGTGCTCTTCAAGGAAATGAAACTTCTATAAGTCATGATGAACTTGTAATTAGGAGTCGGGACCAGTCTATCTCCGATTATGGTGAGATACAAAAGCGTTCAGAATTTTTTGAGCCTTTTATTATGGGATTGACTAATGGAACGGTTGAACAGTTCTGCAAATCGGCAGTTGAACCAATGGGTGAAGAGAGTGATCATGTACACATAATTGCCTTATCTGATGCCTTGGGTGTGCCGATCCGCGTTCTTTACCTTGATCGGAGCTCTTGTGATTCCGGTGGTGTCAGCGTAAATCACCATGATTTTGTTCCTGCTGTTAGTGATGTCTCAAGTGACAGTGCTGGCTCTGAGACTAAGATCCCTTTCATTACTTTGCTCTATCGTCCCGGTCATTATGATATCCTCTATCCAAAGCCATTGGCAAAACCTGGTCGGGCTCTTAGTTTGAACTGCATCGACATTTGA 915 41.31 MANQENLDADSNVESVISIQTSDYDCWGNLGDDDILQQQSAIFVEEAEKVPFEPLTSLEAEYKSGSPILLEKIKVLSGQYIAIRRTRGDGNCFFRSFMFSYLEHILESQDKTEVDRIRTNVENCRKTLRSLGYTEFTFEDFFALFLEQLESALQGNETSISHDELVIRSRDQSISDYGEIQKRSEFFEPFIMGLTNGTVEQFCKSAVEPMGEESDHVHIIALSDALGVPIRVLYLDRSSCDSGGVSVNHHDFVPAVSDVSSDSAGSETKIPFITLLYRPGHYDILYPKPLAKPGRALSLNCIDI 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9637966 9643350 + Cp4.1LG03g13380.1 Cpe03g01177 466894

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01177 304 Gene3D Peptidase C65 Otubain, subdomain 1 53 286 IPR042468 -
Cpe03g01177 304 ProSiteProfiles OTU domain profile. 81 288 IPR003323 -
Cpe03g01177 304 PANTHER UBIQUITIN THIOLESTERASE PROTEIN OTUB 52 292 IPR019400 -
Cpe03g01177 304 Pfam Peptidase C65 Otubain 53 287 IPR019400 -
Cpe03g01177 304 Gene3D Peptidase C65 Otubain, subdomain 2 87 228 IPR042467 -
Cpe03g01177 304 PANTHER UBIQUITIN THIOESTERASE 52 292 - -
Cpe03g01177 304 PIRSF OTUB 28 291 IPR016615 GO:0016579|GO:0016787
Cpe03g01177 304 SUPERFAMILY Cysteine proteinases 54 288 IPR038765 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01177 K09602 OTUB1; ubiquitin thioesterase protein OTUB1 [EC:3.4.19.12] - csv:101204814 512.686
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01177 Cpe-Chr3:9637966 Cpe08g00038 Cpe-Chr8:235049 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1349 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00225 . . . . . . . . . . . . . . . . . . Cpe03g01177 . . . . . . . . . . . . . . . . Chy07g01545 Cme07g01990
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005203 3 3 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01177 Cpe_Chr03 FPKM 45.041553 47.754272 43.488892 44.978233 73.892166 69.695671 73.757912 61.666054 62.123959 60.147442