Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01178 ATGCAATTCGCCAAGCTTGATGATTCTCCTATGTTCCGCAAGCAGATACAAGGCTTGGAGGAAAGTGCTGAATTATTGAGGGAGAGGAGTTTGAAGTTTTATAAAGGATGCCGAAAATACACTGAAGGACTTGGTGAGGGATATGATGGTGATATTGCCTTTGCAAGTTCCTTGGAAACTTTTGGGGGAGGGCATAATGACCCAATCAGTGTTGCCTTTGGAGGACCTGTCATGACCAAATTTACAATTGCATTGAGGGAAATTGGGACATACAAGGAAGTTCTTCGCTCCCAGGTGGAGCATATGCTTAACGACAGATTACTGCAGTTTGTCAATATTGATTTGCTTGAAGTCAAGGAAGCAAGGAAGCGCTTTGACAAGGCTAGTCTTCTCTATGATCAGGCTCGTGAGAAATTCCTGTCACTTAGAAAAGGGACTAAAAGCGACGTTGCTAGTCTTTTGGAAGAGGAACTTCATAACGCGAGATCTGCATTTGAGCAGGCGCGCTTTAGTCTAGTGACTGCTCTTTCTAATGTTGAGGCCAAAAAAAGGTTCGAATTTTTAGAGGCAGGTTACGAATTGTTGCATCAGATGGAGCCGTATATTAATCAGGTGTTGACCTATGCCCAGCAATCAAGAGAAAGGTCCAACTATGAGCAGGCTGCTCTTAGTGAACGGATGCAAGAGTACAAGAGGCAGGTCGATCGGGAGAGTAAGTGGGCATCCAATGGTTCTAATGGATCCCCTAATGGAGACGGTATTCAAGCGATCGGTAGAAGTTCACATAAAATGATTGAGGAAGTTATGCAATCTGCTGCAAAAGGAAAGGTTCAAACCATTCGACAAGGTTATCTCTCAAAGCGTTCTTCGAACTTGAGAGGCGACTGGAAAAGAAGATTTTTTGTTCTTGATAGTCGGGGATTGCTGTATTATTATCGCAAGCAGTGCAGCAAACCATCTGCATCTTTAGGACAACTAGCTGGTCAGAGGAATAGTTCAGAGCTTGGTTCTGGCCTTTTGAGCCGCTGGCTTTCTTCCCATTATCAGGGTGGGGTGCATGATGAGAAATCTGTAGCTCATCATACAGTTAACCTGCTCACTTCGACGATCAAAGTCGATGCAGACCAGTCCGATCTTCGGTTTTGCTTTCGCATCATTTCACCAACCAAGAGTTATACTTTGCAGGCAGAGAGTGCACTTGATCAAATGGATTGGATTGAAAAAATAACTGGAGTTATTGCTTCATTACTAAGTTCTCAGGCTCCAGAGAGGTGTCTTGCGGCGGGTAGTCCCATGGGAAGTTTTCATAACAGATCTACCAGCGAGAGTAGTTCGTTTGAAAGTTCAGACTTCGATCAGATAGCGGTTGAAGAATATGCATCTGAAAGAAGCCTTAATTCTTCTCATATGGAACGCCCTTCAAGAAATTTGCAACAGCAACGATCAGCGATGAGAATTGAGAAGCCAATAGACGTACTTCGTAAAGTATGCGGTAATGATAAGTGTGCGGATTGTGGGGCTCCTGAACCCGACTGGGCATCTTTGAATCTCGGGGTTCTTGTTTGTATTGAATGTTCTGGTGTTCATCGTAATCTTGGTGTTCATATATCAAAGGTGAGATCCCTTACATTGGATGTCAAAGTGTGGGAACCTTCAGTTATCAGTTTGTTTCAATCCCTCGGAAATACCTTTGCGAACTCGGTTTGGGAGGAGATGCTGCAATCCAGAAGTGCCGTTCCGGTCGATCCTGTAACGACAGGCTTGTACAAGTCTGATAAACAGCATATGCTTTCTATCAGCAAACCTAATCATTCTGATCCAATATCAGTGAAGGAGAAGTTCATTCATGCAAAGTATGCTGAAAAGGCTTTCGTTCGGAAACCAAAGGAAAATCAATATCCTCATTTAGTCATGCAACAGATATGGGACAGTGTACACTCGAACGACAAGAAAGCCGTTTATCGTCTCATTATAAACTCGGAAGCAGATGTAAATGCAGTGTACACGCAACTGCCTTGTGGCTCTTTGACTCTTGCTAAAGTAATGTTACTGCAGGAGTCGACTGGACTCGAACAACATAATTACAAAGCCAGTGATTTCGTTGAAAGATCTACGAGCTCTTCCAACTTGGGAGGTACAGGTGGTGATGGGCAACCAATGGAGGATCTAGAAGGCTGCACACTCCTGCATCTCGCTTGCAAAACTGGAGACATTGGTATGCTCGAGCTCCTTTTACAATGCGGTGCAAACGTTAATGCCATCGACTCTCGACGTCAATCGGCACTCCATCATTGTATCGTTAAAGGCAAAACTGGGTTTGCGAAATTGCTTCTTTCCAGGGGAGCCGATCCACGGGCGGTGAACGGAGACGGTAAAACCCCTCTCGAGTTGGCAGTAGAGCTAAAACTTAATGATGTTGAGGTTCTTGCTATACTGGCTGATGCAAATGGATGA 2454 44.3 MQFAKLDDSPMFRKQIQGLEESAELLRERSLKFYKGCRKYTEGLGEGYDGDIAFASSLETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLLEVKEARKRFDKASLLYDQAREKFLSLRKGTKSDVASLLEEELHNARSAFEQARFSLVTALSNVEAKKRFEFLEAGYELLHQMEPYINQVLTYAQQSRERSNYEQAALSERMQEYKRQVDRESKWASNGSNGSPNGDGIQAIGRSSHKMIEEVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGLLYYYRKQCSKPSASLGQLAGQRNSSELGSGLLSRWLSSHYQGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKSYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLAAGSPMGSFHNRSTSESSSFESSDFDQIAVEEYASERSLNSSHMERPSRNLQQQRSAMRIEKPIDVLRKVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEEMLQSRSAVPVDPVTTGLYKSDKQHMLSISKPNHSDPISVKEKFIHAKYAEKAFVRKPKENQYPHLVMQQIWDSVHSNDKKAVYRLIINSEADVNAVYTQLPCGSLTLAKVMLLQESTGLEQHNYKASDFVERSTSSSNLGGTGGDGQPMEDLEGCTLLHLACKTGDIGMLELLLQCGANVNAIDSRRQSALHHCIVKGKTGFAKLLLSRGADPRAVNGDGKTPLELAVELKLNDVEVLAILADANG 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9646363 9656771 + Cp4.1LG03g13390.1 Cpe03g01178 466895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01178 817 SUPERFAMILY Ankyrin repeat 649 812 IPR036770 -
Cpe03g01178 817 SMART ANK_2a 724 753 IPR002110 GO:0005515
Cpe03g01178 817 SMART ANK_2a 757 786 IPR002110 GO:0005515
Cpe03g01178 817 SMART ANK_2a 790 817 IPR002110 GO:0005515
Cpe03g01178 817 ProSiteProfiles Ankyrin repeat region circular profile. 724 755 - -
Cpe03g01178 817 ProSiteProfiles Ankyrin repeat profile. 724 756 IPR002110 GO:0005515
Cpe03g01178 817 CDD BAR_SFC_plant 14 201 IPR035670 -
Cpe03g01178 817 MobiDBLite consensus disorder prediction 433 449 - -
Cpe03g01178 817 PRINTS HIV Rev interacting protein signature 541 562 IPR001164 GO:0005096
Cpe03g01178 817 PRINTS HIV Rev interacting protein signature 499 518 IPR001164 GO:0005096
Cpe03g01178 817 PRINTS HIV Rev interacting protein signature 518 535 IPR001164 GO:0005096
Cpe03g01178 817 Pfam Ankyrin repeats (3 copies) 729 810 IPR002110 GO:0005515
Cpe03g01178 817 MobiDBLite consensus disorder prediction 239 255 - -
Cpe03g01178 817 ProSiteProfiles Ankyrin repeat profile. 757 789 IPR002110 GO:0005515
Cpe03g01178 817 SMART arf_gap_3 487 630 IPR001164 GO:0005096
Cpe03g01178 817 Gene3D - 632 817 IPR036770 -
Cpe03g01178 817 CDD ArfGap 490 619 - -
Cpe03g01178 817 SUPERFAMILY ArfGap/RecO-like zinc finger 486 627 IPR037278 -
Cpe03g01178 817 CDD PH_ACAP 281 418 - -
Cpe03g01178 817 SMART PH_update 279 416 IPR001849 -
Cpe03g01178 817 MobiDBLite consensus disorder prediction 429 449 - -
Cpe03g01178 817 Gene3D Arf GTPase activating protein 467 631 IPR038508 -
Cpe03g01178 817 Coils Coil 118 138 - -
Cpe03g01178 817 ProSiteProfiles PH domain profile. 278 414 IPR001849 -
Cpe03g01178 817 Pfam Putative GTPase activating protein for Arf 490 627 IPR001164 GO:0005096
Cpe03g01178 817 SUPERFAMILY PH domain-like 279 420 - -
Cpe03g01178 817 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 815 - -
Cpe03g01178 817 Pfam PH domain 280 413 IPR001849 -
Cpe03g01178 817 ProSiteProfiles ARF GTPase-activating proteins domain profile. 487 632 IPR001164 GO:0005096
Cpe03g01178 817 Pfam BAR domain of APPL family 6 214 - -
Cpe03g01178 817 PANTHER CENTAURIN/ARF 1 815 IPR045258 GO:0005096
Cpe03g01178 817 Gene3D Arfaptin homology (AH) domain/BAR domain 4 237 IPR027267 -
Cpe03g01178 817 SUPERFAMILY BAR/IMD domain-like 6 301 IPR027267 -
Cpe03g01178 817 SMART 5bar 11 204 IPR004148 GO:0005515|GO:0005737
Cpe03g01178 817 Coils Coil 213 233 - -
Cpe03g01178 817 Gene3D - 271 426 IPR011993 -
Cpe03g01178 817 MobiDBLite consensus disorder prediction 234 256 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01178 K12489 ACAP; Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein - csv:101203435 1440.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00899 Cpe-Chr1:5282150 Cpe03g01178 Cpe-Chr3:9646363 0 dispersed
Cpe03g01178 Cpe-Chr3:9646363 Cpe06g00717 Cpe-Chr6:4457683 3.06E-25 dispersed
Cpe03g01178 Cpe-Chr3:9646363 Cpe08g00039 Cpe-Chr8:242868 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1342 . . . Bda11g00373 Bpe13g00827 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00226 . . Blo02g00208 . . Bda11g00373 Bpe14g00814 . . Bma06g01328 . . . . . . . . Cpe03g01178 . . . . . . . . . . . . . . . . Chy07g01544 Cme07g01989
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004542 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01178 Cpe_Chr03 FPKM 95.78846 101.794861 52.442154 48.056492 159.630936 188.352554 151.572052 129.620422 130.72049 121.212379