Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01185 ATGATCAGGTCGTTTGGTCACCGCCTAAAGCTACCATGTTCATCTTTCCGAATGCATTACAGTTATGGTGCTCAAAGAAGCAATCTTCGGTATTACTTCTCTGCGCAGGCTGCTCTGCCTCAGCAATGGACGGGGAGTATGGCCGACCGACCGCGGTCGGAGTTGGATTCTCATGCCTATGCTGCTCTGCTCCAAGACTGTATCCAAAGGGGTGATGCAAATTTGGGAAAACTTGTTCATTGTAAGATTGTGAAAGAAGGTGGTTGTTTGGACTTGTTTGCTTTCAACGTCCTTCTCAATGCGTATGTGAAACTTGGGTTGTTGACCGATGCCAGAAATGTGTTCGATGAAATGCCTGAGAGAAATACGGTTTCGTTTGTGACGCTAATTCACGGGTATGTGCAGTCTAATGAATTCTTTGAGGCGTTTGAGTTATTTGGTAGACTACACGGTGAAGGTCATGAGCTTAATCCGTTTGTTTTCACTAGTGTTTTGAAGTTGCTTGTTAGTATGGAATGGGCAGAATTGGGGAGTGTTGTCCATGGTTGTGTATTTAAGATTGGATATGGTTCTAATACTTTTATTGGGACTGCTCTTATCGATGCTTACTCTGTTTGTGGTTGCGTTAATATGGCTAGAGAAGTATTTGATGGGATTAGTTGTAAGGATATGGTAGCTTGGACTGGCATGATTGCTTCTTATGCCGAAAATGATTGTTTCTCTGAAGCATTGGAACTCTTCTCACGGATGAGTGTAGCTGGATTCAGACCAAACAATTTTACTTTTGCTGGTGTGCTTAAGGCCTGTCTTGGCCTGCAGAACTTCGATGCAGGGAAGACGGTTCATTGTTCTGCTTTAAAAACCAGTTACGAGCGAGATCTTTATGTCGGAGTTGCACTACTTGAATTGTACACCAGATGTGGAGATAATGATGATGCTTGGCGAGCTTTTGGGGATATGCCTAAAAAGGATGTGATTCCATGGAGTTTCATGATTGCAAGATTTGCTCAGAGTGGTCAATCTGAAAAGGCTTTGGAACTTTTTGGTCAAATGAGGAGAGCTTTTGTTGTGCCCAATGAATTTACATTTTCTAGTGTGCTCCAAGCTTCTGCAGCCATGGAGGCCTTAGATTTGGGTGGCCAAAACTTTGCTGTGTTGTGTGGGAAAGGTTAA 1173 43.31 MIRSFGHRLKLPCSSFRMHYSYGAQRSNLRYYFSAQAALPQQWTGSMADRPRSELDSHAYAALLQDCIQRGDANLGKLVHCKIVKEGGCLDLFAFNVLLNAYVKLGLLTDARNVFDEMPERNTVSFVTLIHGYVQSNEFFEAFELFGRLHGEGHELNPFVFTSVLKLLVSMEWAELGSVVHGCVFKIGYGSNTFIGTALIDAYSVCGCVNMAREVFDGISCKDMVAWTGMIASYAENDCFSEALELFSRMSVAGFRPNNFTFAGVLKACLGLQNFDAGKTVHCSALKTSYERDLYVGVALLELYTRCGDNDDAWRAFGDMPKKDVIPWSFMIARFAQSGQSEKALELFGQMRRAFVVPNEFTFSSVLQASAAMEALDLGGQNFAVLCGKG 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9702531 9705871 - Cp4.1LG03g13180.1 Cpe03g01185 466902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01185 390 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Cpe03g01185 390 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Cpe03g01185 390 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 91 125 IPR002885 -
Cpe03g01185 390 Pfam PPR repeat family 222 269 IPR002885 -
Cpe03g01185 390 Pfam PPR repeat family 323 369 IPR002885 -
Cpe03g01185 390 Pfam PPR repeat 197 217 IPR002885 -
Cpe03g01185 390 Pfam PPR repeat 94 122 IPR002885 -
Cpe03g01185 390 Pfam PPR repeat 124 153 IPR002885 -
Cpe03g01185 390 PANTHER - 155 381 - -
Cpe03g01185 390 PANTHER - 57 148 - -
Cpe03g01185 390 TIGRFAM PPR: pentatricopeptide repeat domain 225 258 IPR002885 -
Cpe03g01185 390 TIGRFAM PPR: pentatricopeptide repeat domain 328 360 IPR002885 -
Cpe03g01185 390 TIGRFAM PPR: pentatricopeptide repeat domain 124 157 IPR002885 -
Cpe03g01185 390 TIGRFAM PPR: pentatricopeptide repeat domain 94 122 IPR002885 -
Cpe03g01185 390 Gene3D Tetratricopeptide repeat domain 34 175 IPR011990 GO:0005515
Cpe03g01185 390 Gene3D Tetratricopeptide repeat domain 176 281 IPR011990 GO:0005515
Cpe03g01185 390 PANTHER OS01G0913400 PROTEIN-RELATED 155 381 - -
Cpe03g01185 390 PANTHER OS01G0913400 PROTEIN-RELATED 57 148 - -
Cpe03g01185 390 Gene3D Tetratricopeptide repeat domain 282 380 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01185 - - - csv:101203356 672.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01185 Cpe-Chr3:9702531 Cpe09g00246 Cpe-Chr9:1415813 1.68E-20 dispersed
Cpe03g01185 Cpe-Chr3:9702531 Cpe17g00857 Cpe-Chr17:6651891 2.87E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1337 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe03g01185 . . . . . . . . . . . . . . . . . Cme07g01977
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010173 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 2 1 1 0 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01185 Cpe_Chr03 FPKM 7.001901 7.239945 10.484866 11.091778 7.605733 6.344567 7.298168 9.568505 9.808374 10.113327