Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01186 ATGGATGGAAGAGTCGTTGGGTCTTGTCTGATTGGAAAAGAAGCGAAGGGAAAGCTGGAACTTTTAAACACACAGCCGGAAAATGGTCTGGAGATCCCGACGATAAAGGTACCAGAGTTCACCAATGAGAACAGAACTTTAGTTGTTCAGTATTCTATCAAATTTGAACAGGATATTGAATGTGGTGGCGGGTACATCAAGCTTCATTCTGGTTATGTCAATCAGAGGAAATATGGTGGTGATACCCCTTACAGTTTGATGTTTGGACCAGATTTATGTGGTACTCAGACGAAAAAACTCCATATGATACTTTCTTACCAGGGACAGAATTATCCCATAAAGAAGGATTTGCAATGTGAAACGGACAAGTTAACTCATTTCTACACATTCATTCTTAGACCTGATGCTAGTTACAGTATCCTTGTTGATAATCGAGAAAGAGATTCTGGAAGCATGTACAGTGATTGGGACATCCTGCCACCAAGGAAAATCAAAGATGTTAAGGCAAAAAAGCCTGCTGACTGGGATGACAGAGAATACATTGAAGATCCTAATGATGTTAAACCGGAGGGATACGATTCAGTTCCAGCCGAGATTCCTGATCCAAAGGCAAAAGAGCCTGATAATTGGGATGAGGATGAGGATGGCTTATGGAGGGCTCCCAAGGTTCCAAATCCAGCATACAAGGGACCGTGGAAGCGTAAGAAAATCAAAAACCCCAATTACAAGGGAAAGTGGAAGACTCCATGGATCGATAATCCAGAGTTTGAGGATGATCCTAATCTTTACGTGCTGAAACCAATAAAGTACGTGGGCATCGAAGTTTGGCAGGTAAAAGCTGGATCAGTGTTTGACAACATTTTGATATGCGATGATCCACAGTATGCAAAGGAAGTTGTTGACAATACGTTTGCAAGTAATAGGGAGGCTGAAAAGGAAGCTTTTGAGGAAGCAGAGAAAGAAAGGAAGGCTAGGGAAGAGAAGGAGGCTGAAAGGGCTCGAGAGGAAGGTGAAAAGAGAAGAAGGGAGCGAGATAATCGTCATAAAGATAGGAGGAGGCATTATCGGAGGGATCGGCATCACTTTGATGACTACCACGTCCTGAAATTCGCTTTCACAGAGCTAATTCCCAATCGTATGGACTGA 1146 42.76 MDGRVVGSCLIGKEAKGKLELLNTQPENGLEIPTIKVPEFTNENRTLVVQYSIKFEQDIECGGGYIKLHSGYVNQRKYGGDTPYSLMFGPDLCGTQTKKLHMILSYQGQNYPIKKDLQCETDKLTHFYTFILRPDASYSILVDNRERDSGSMYSDWDILPPRKIKDVKAKKPADWDDREYIEDPNDVKPEGYDSVPAEIPDPKAKEPDNWDEDEDGLWRAPKVPNPAYKGPWKRKKIKNPNYKGKWKTPWIDNPEFEDDPNLYVLKPIKYVGIEVWQVKAGSVFDNILICDDPQYAKEVVDNTFASNREAEKEAFEEAEKERKAREEKEAERAREEGEKRRRERDNRHKDRRRHYRRDRHHFDDYHVLKFAFTELIPNRMD 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9708696 9714831 + Cp4.1LG03g13270.1 Cpe03g01186 466903

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01186 381 Pfam Calreticulin family 216 289 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cpe03g01186 381 Pfam Calreticulin family 39 215 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cpe03g01186 381 PRINTS Calreticulin signature 56 74 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cpe03g01186 381 PRINTS Calreticulin signature 82 98 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cpe03g01186 381 PRINTS Calreticulin signature 171 184 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cpe03g01186 381 PRINTS Calreticulin signature 270 290 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cpe03g01186 381 PRINTS Calreticulin signature 199 221 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cpe03g01186 381 PRINTS Calreticulin signature 237 256 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cpe03g01186 381 SUPERFAMILY Concanavalin A-like lectins/glucanases 39 174 IPR013320 -
Cpe03g01186 381 MobiDBLite consensus disorder prediction 309 344 - -
Cpe03g01186 381 Gene3D Calreticulin/calnexin, P domain 161 262 IPR009033 GO:0005509|GO:0005515
Cpe03g01186 381 PANTHER CALRETICULIN AND CALNEXIN 35 354 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cpe03g01186 381 Coils Coil 307 345 - -
Cpe03g01186 381 PIRSF Calreticulin 27 364 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cpe03g01186 381 ProSitePatterns Calreticulin family signature 2. 86 94 IPR018124 GO:0005509
Cpe03g01186 381 SUPERFAMILY P-domain of calnexin/calreticulin 157 272 IPR009033 GO:0005509|GO:0005515
Cpe03g01186 381 MobiDBLite consensus disorder prediction 175 189 - -
Cpe03g01186 381 PANTHER CALRETICULIN-3 35 354 - -
Cpe03g01186 381 MobiDBLite consensus disorder prediction 309 355 - -
Cpe03g01186 381 MobiDBLite consensus disorder prediction 199 219 - -
Cpe03g01186 381 MobiDBLite consensus disorder prediction 175 222 - -
Cpe03g01186 381 Gene3D - 14 333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01186 K08057 CALR; calreticulin - csv:101203114 570.081
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01186 Cpe-Chr3:9708696 Cpe11g00880 Cpe-Chr11:7126933 3.29E-135 dispersed
Cpe03g01186 Cpe-Chr3:9708696 Cpe07g00870 Cpe-Chr7:7840071 1.08E-135 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1276 . . . . . . . . . . . . . . . . Cpe03g01186 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008608 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 2 1 1 1 1 1 2 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01186 Cpe_Chr03 FPKM 0.0 0.0 2.917003 1.710361 1.361825 0.377294 0.951704 0.0 0.0 0.0