Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01194 ATGGAAAACCCCTTTCCATCCAAGGAGGAAGGGATGGGGTATTGGGGGCCTTCCAGAACTCAGGCCGATGCTCTGACTTTTACTGACGCTGGAATGAGGATTCCTAGTCCTGAAGATGTGCTCCACAGCTTCTCAGAGCTGATGAGTTTTGATTCTTATGCAGGATGGGGCAACAACTGTGCAGTAATGGATCCGGTTTTTACCTCTTGTGGAATTTCGTCGATTCCGCCAACGAGTACTTGCCCTTCTATGGAGGGCTCGACTTTCCCAGAAGGGGGGAGCCATGAAATACTTCCTCTGAATGAACTTGGTGGAGCTTCCATTTCCATGGCGAATTCTTTTACCTGTGGAGATGAGGTTACGTTTCAGCAGCCAGATACTGAATTTGGGGTATCTGATGTTTCGGACAACACAAATGAATCGGGTTCGAATTCAAATAACGTCCAAGACATGGATAGTTGTCTGATTTCTAGGCCGATTAGTTGGTCACTTGATGAGAGAATGCTGAGGGCATTGTCCTTGTTTAAAGAGTCTTCACCTGGAGGTATTTTGGCTCAAGTCTGGGTGCCTATGAAGCATGGAAACCAATTCTACCTGAGCACCACCGATCAGCCGTATTTGCTCGATCAAATGCTCACTGGGTACCGTGAAGTGTCGAGATGGTATACATTCTCTGCAGAAGGGAAACTGGGTTCTCTCCTTGGGCTTCCTGGTCGTGTTTTCAATTCCAAAATTCCAGAGTGGACATCAAATGTTAGATATTACAGTGAAAATGAGTATCTGAGAATGGAACATGCAATCGGTCATGAGGTTTATGGATCAATTGCCTTACCAATATTCAGTAATGAACTTGAAAGGTCTTGCTGTGCCGTACTTGAAGTTGTTACTACAAAGGAAAAGCCCAATTTTGATGCAGAGATTGACATTGTTTCCCGAGCCCTGGAGATTGTTAGCTTGAGAACTATTGCACCGCCTCGACTATATCCTCAGTGTTTGAAGCAGAACCAGAGATCTGTATTAGCAGAGATAACAGATGTGCTACGCGCTGTATGTCATGCACATAGGCTACCTCTGGCACTCACCTGGATTCCTTGCTGTTATACCTTGCAAGCTGTTGATGAGGCTGCTAGAGTTCGTGTGAAGGAGAACGACGTCAGCCCAAAGGGGAAATCTGTATTATGCATTGAGGAAACAGCGTGTTATGTGAATGACAAAGCAACTCAAGGATTTGTGCATGCGTGTATGGAACATCATCTTGAAGAAGGACAAGGGATAGTTGGGAAAGCTCTTCAATCTAATCATCCCTTCTTTTATCCTGACGTGAAGGCATATAATATTAATGAGTATCCGCTGGTCCATCATGCACGCAAGTTTGGTTTGAATGCTGCCGTTGCAATCAGGCTGAGAAGCACATACACTGGTGCTGATGATTATATACTCGAATTCTTTCTACCTGTCAATATGAAAGGAAGCTCAGAACAGCAACTTTTATTGAACAATCTCTCTGGTACCATGCAAAGAATGTGCCGGAGCTTGAGAACAGTTTCAAAGGACGAATTATTGGGGGCCAAGGATCCTGATGCTGGATTCCAGAGTGGAATGGCTGGTAAGTCTGCAACTACGTCCAGGAGAAACTCACAGTCTACGGTTACAGACAGTGAAACAAGGGTATCTAACTCGATAAATGATGGAACTAAAGCCGAATGCCCTAAGAAGCAGACGACTAATGGTACACGGAGGCAGGCGGACAAAAAACGTAGCACAGCTGAAAAAAACGTGAGCTTTAGTGTTCTTCAGCAATATTTTTCTGGGAGTCTCAAGGATGCAGCGAAGAGCATTGGTGTTTGCCCAACAACCCTGAAAAGAATATGCAGACAACATGGGATTCTGAGGTGGCCGTCCCGTAAAATAAACAAGGTAAACCGTTCGTTAGGGAAAATACAGACGGTTCTCGATTCTGTGAAGGGGGTGGAGTGTAGACTGAAGTTTGATCCAACTACAGGGGGTCTTATGGCAGCCGGTTCTCTTATTCCAGAGCTCAATGGGCAGAACAGTCCTCTCTTCTCTGATAACAATCCATCTATAATAAACCTCGAGCCGTTACCTCGGGATGTAAATTCAGTTCCTCCTATCCCTTTCGATAGTCAGAACCCCGCCGTGAAGTTGGAAATGGACGACCAAAGAAACTCGTCGAGGAGTGTTCTTATTCCTGAGAAGGAACCCAGTGTTTGCCAGCTTGATTGTGGTGAAGGTTCAAAGTCCACTGGGTTAGATGCTGCATCATGCCAGCTTTCTGGCCTGGATGTGATGGATTGGGATGTCCCAGGGAATGCCGCAGGATATCTCCAACTCTACGAAGAAGTTGGCAAGAGATTCAAGTTAAACCAGGGGACATTCCAGCTCAAATACCTCGACGACGAAAAAGAATGGGTAATGCTAGTTAGCAATTCAGACATGCAGGAATGTCTTGAGGTGATGGATGAGATCGGCACCAGAAACGTGAAGTTTCTCGTACGCGATATCACATGTGCCGTGGGCAGTTCTGGCAGCAGTAGCTGCTACCTATCTGGAGGTTCATGA 2580 45.74 MENPFPSKEEGMGYWGPSRTQADALTFTDAGMRIPSPEDVLHSFSELMSFDSYAGWGNNCAVMDPVFTSCGISSIPPTSTCPSMEGSTFPEGGSHEILPLNELGGASISMANSFTCGDEVTFQQPDTEFGVSDVSDNTNESGSNSNNVQDMDSCLISRPISWSLDERMLRALSLFKESSPGGILAQVWVPMKHGNQFYLSTTDQPYLLDQMLTGYREVSRWYTFSAEGKLGSLLGLPGRVFNSKIPEWTSNVRYYSENEYLRMEHAIGHEVYGSIALPIFSNELERSCCAVLEVVTTKEKPNFDAEIDIVSRALEIVSLRTIAPPRLYPQCLKQNQRSVLAEITDVLRAVCHAHRLPLALTWIPCCYTLQAVDEAARVRVKENDVSPKGKSVLCIEETACYVNDKATQGFVHACMEHHLEEGQGIVGKALQSNHPFFYPDVKAYNINEYPLVHHARKFGLNAAVAIRLRSTYTGADDYILEFFLPVNMKGSSEQQLLLNNLSGTMQRMCRSLRTVSKDELLGAKDPDAGFQSGMAGKSATTSRRNSQSTVTDSETRVSNSINDGTKAECPKKQTTNGTRRQADKKRSTAEKNVSFSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGILRWPSRKINKVNRSLGKIQTVLDSVKGVECRLKFDPTTGGLMAAGSLIPELNGQNSPLFSDNNPSIINLEPLPRDVNSVPPIPFDSQNPAVKLEMDDQRNSSRSVLIPEKEPSVCQLDCGEGSKSTGLDAASCQLSGLDVMDWDVPGNAAGYLQLYEEVGKRFKLNQGTFQLKYLDDEKEWVMLVSNSDMQECLEVMDEIGTRNVKFLVRDITCAVGSSGSSSCYLSGGS 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9777035 9783003 + Cp4.1LG03g13250.1 Cpe03g01194 466911

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01194 859 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 9 774 - -
Cpe03g01194 859 ProSiteProfiles RWP-RK domain profile. 574 660 IPR003035 -
Cpe03g01194 859 MobiDBLite consensus disorder prediction 523 590 - -
Cpe03g01194 859 SUPERFAMILY CAD & PB1 domains 779 843 - -
Cpe03g01194 859 Pfam RWP-RK domain 592 640 IPR003035 -
Cpe03g01194 859 Gene3D - 775 840 - -
Cpe03g01194 859 MobiDBLite consensus disorder prediction 534 576 - -
Cpe03g01194 859 SMART PB1_new 757 841 IPR000270 GO:0005515
Cpe03g01194 859 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 778 856 - -
Cpe03g01194 859 Pfam PB1 domain 780 839 IPR000270 GO:0005515
Cpe03g01194 859 PANTHER PROTEIN NLP8 778 856 IPR045012 GO:0003700
Cpe03g01194 859 PANTHER PROTEIN NLP8 9 774 IPR045012 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01194 - - - csv:101222520 1338.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01194 Cpe-Chr3:9777035 Cpe14g00447 Cpe-Chr14:2792768 1.36E-15 dispersed
Cpe03g01194 Cpe-Chr3:9777035 Cpe08g00047 Cpe-Chr8:308576 6.70E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1280 . . . . . Bpe14g01069 . . . . Cma06g01701 Cma14g01419 . Car14g01252 Sed02g0966 . Cpe03g01194 Bhi01g03703 Tan10g1398 Cmetu07g0313 . Hepe05g1115 . Lcy11g1016 . . . . . . . . . . Cone11ag0645 . . . Cme07g01966 Blo02g00452 Blo07g00121 Bda11g00482 Bda13g00247 . . Bma02g00962 Bma06g01446 . . Cmo14g01455 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006292 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49240 PF00564 PB1 5.40E-12 CL0072 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01194 Cpe_Chr03 FPKM 2.182796 1.998327 4.985659 2.891918 3.263175 1.246475 2.277453 2.889408 2.178192 1.709965